RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TOR2AQ5JU69 321 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 HIST1H2BAQ96A08 127 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 SMDT1Q9H4I9 107 aa13.23□□□□□ -0.29
CDX1-202ENST00000616154 SERTM2A0A1B0GWG4 89 aa13.22□□□□□ -0.29
CDX1-202ENST00000616154 RBAKDNA6NC62 111 aa13.22□□□□□ -0.29
CDX1-202ENST00000616154 ZNF324O75467 553 aaPredicted RBP13.22□□□□□ -0.29
CDX1-202ENST00000616154 TCRAP04437 139 aa13.22□□□□□ -0.29
CDX1-202ENST00000616154 HTN1P15515 57 aa13.22□□□□□ -0.29
CDX1-202ENST00000616154 LINC00588Q9Y4M8 146 aa13.22□□□□□ -0.29
CDX1-202ENST00000616154 TRAV12-3A0A0B4J271 114 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 C7orf71A4D174 169 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 PDE6DO43924 150 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 CSN1S1P47710 185 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 EIF4E3Q8N5X7 224 aaKnown RBP13.21□□□□□ -0.29
CDX1-202ENST00000616154 ZFAND2AQ8N6M9 145 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 CMTM2Q8TAZ6 248 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 ZNF492Q9P255 531 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 KLF12Q9Y4X4 402 aa13.21□□□□□ -0.29
CDX1-202ENST00000616154 IGKV2-40A0A087WW87 121 aaPredicted RBP13.2□□□□□ -0.3
CDX1-202ENST00000616154 C16orf90A8MZG2 172 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 F6UZH7 168 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 TMEM250H0YL14 139 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 PEX7O00628 323 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 IGKV2D-40P01614 121 aaPredicted RBP13.2□□□□□ -0.3
CDX1-202ENST00000616154 GNG5P63218 68 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 CYB561D1Q8N8Q1 229 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 VGLL1Q99990 258 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 KRTAP4-5Q9BYR2 181 aa13.2□□□□□ -0.3
CDX1-202ENST00000616154 NOP10Q9NPE3 64 aaKnown RBP13.2□□□□□ -0.3
CDX1-202ENST00000616154 SCO2A0A1W2PP80 73 aa13.19□□□□□ -0.3
CDX1-202ENST00000616154 SRSF3P84103 164 aaKnown RBP13.19□□□□□ -0.3
CDX1-202ENST00000616154 DAZ2Q13117 558 aaKnown RBP13.19□□□□□ -0.3
CDX1-202ENST00000616154 TMEM78Q5T7P6 136 aa13.19□□□□□ -0.3
CDX1-202ENST00000616154 EIF5A2Q9GZV4 153 aaKnown RBP13.19□□□□□ -0.3
CDX1-202ENST00000616154 C9JQL5 133 aa13.18□□□□□ -0.3
CDX1-202ENST00000616154 IGLV2-11P01706 119 aa13.18□□□□□ -0.3
CDX1-202ENST00000616154 SRP19P09132 144 aaKnown RBP13.18□□□□□ -0.3
CDX1-202ENST00000616154 ANXA2RQ3ZCQ2 193 aa13.18□□□□□ -0.3
CDX1-202ENST00000616154 GOLT1AQ6ZVE7 132 aa13.18□□□□□ -0.3
CDX1-202ENST00000616154 C11orf72Q8NBR9 251 aa13.18□□□□□ -0.3
CDX1-202ENST00000616154 TRBV6-1A0A0K0K1D8 114 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 FBLL1A6NHQ2 334 aaKnown RBP13.17□□□□□ -0.3
CDX1-202ENST00000616154 J3KRW8 73 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 CDK2AP2O75956 126 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 ZNF138P52744 262 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 BTN1A1Q13410 526 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 PEA15Q15121 130 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 TMEM75Q8N9X5 138 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 C18orf15Q96N68 181 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 LENEPQ9Y5L5 61 aa13.17□□□□□ -0.3
CDX1-202ENST00000616154 PRR9Q5T870 116 aa13.16□□□□□ -0.3
CDX1-202ENST00000616154 UQCC3Q6UW78 93 aa13.16□□□□□ -0.3
CDX1-202ENST00000616154 SNURFLB1AK76 121 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 K7EQM0 130 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 GPX1P07203 203 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 OR5I1Q13606 314 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 TMEM183BQ1AE95 376 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 COMMD7Q86VX2 200 aa13.15□□□□□ -0.3
CDX1-202ENST00000616154 TRAV26-1A0A087WT03 109 aa13.14□□□□□ -0.31
CDX1-202ENST00000616154 S100A9P06702 114 aaKnown RBP13.14□□□□□ -0.31
CDX1-202ENST00000616154 IBA57Q5T440 356 aaKnown RBP13.14□□□□□ -0.31
CDX1-202ENST00000616154 FMC1Q96HJ9 113 aa13.14□□□□□ -0.31
CDX1-202ENST00000616154 LINC00479Q96M42 142 aa13.14□□□□□ -0.31
CDX1-202ENST00000616154 Q9H8V8 135 aa13.14□□□□□ -0.31
CDX1-202ENST00000616154 RPH3ALQ9UNE2 315 aa13.14□□□□□ -0.31
CDX1-202ENST00000616154 APOBP04114 4563 aaKnown RBP13.14□□□□□ -0.31
CDX1-202ENST00000616154 TRAV8-1A0A0A6YYK1 113 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 HOXA5P20719 270 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 RNASE4P34096 147 aaKnown RBP13.13□□□□□ -0.31
CDX1-202ENST00000616154 AKR1C3P42330 323 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 TTC32Q5I0X7 151 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 Q8TAT8 98 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 DERL1Q9BUN8 251 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 GAGE12BA1L429 117 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 H3BNG1 76 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 GAGE7O76087 117 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 GAGE12FP0CL80 117 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 GAGE12GP0CL81 117 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 GAGE12IP0CL82 117 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 RPL35P42766 123 aaKnown RBP13.13□□□□□ -0.31
CDX1-202ENST00000616154 TCL1AP56279 114 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 FLI1Q01543 452 aaPredicted RBP13.13□□□□□ -0.31
CDX1-202ENST00000616154 COX8CQ7Z4L0 72 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 Q86TA4 180 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 UPK3BQ9BT76 320 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 KRTAP1-5Q9BYS1 174 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 PSG8Q9UQ74 426 aa13.13□□□□□ -0.31
CDX1-202ENST00000616154 DNAH5Q8TE73 4624 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 TRAV34A0A0B4J273 112 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 A0A0J9YY99 117 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 LTAP01374 205 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 Q6AWC8 147 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 TVP23CQ96ET8 276 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 PARLQ9H300 379 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 GSN-AS1Q9NRJ2 163 aa13.12□□□□□ -0.31
CDX1-202ENST00000616154 TRBV20OR9-2A0A075B6H5 130 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 IGHV1OR15-1A0A075B7D0 117 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 NDUFA5Q16718 116 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 Q6ZQT7 251 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 Q6ZTI0 123 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms