RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 C15orf53Q8NAA6 179 aa11.85□□□□□ -0.51
TRIM28-215ENST00000601150 MDFICQ9P1T7 246 aa11.85□□□□□ -0.51
TRIM28-215ENST00000601150 A0A1B0GVG6 124 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 GCGP01275 180 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 ZNF80P51504 273 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-215ENST00000601150 C9orf62Q8N4C0 152 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 KCNS1Q96KK3 526 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 C18orf15Q96N68 181 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 SDF2L1Q9HCN8 221 aa11.84□□□□□ -0.51
TRIM28-215ENST00000601150 MRPL16Q9NX20 251 aaKnown RBP11.84□□□□□ -0.51
TRIM28-215ENST00000601150 SULT1A2P50226 295 aa11.83□□□□□ -0.52
TRIM28-215ENST00000601150 Q86TA4 180 aa11.83□□□□□ -0.52
TRIM28-215ENST00000601150 FMC1Q96HJ9 113 aa11.83□□□□□ -0.52
TRIM28-215ENST00000601150 SPXQ9BT56 116 aa11.83□□□□□ -0.52
TRIM28-215ENST00000601150 GNRH2O43555 120 aa11.82□□□□□ -0.52
TRIM28-215ENST00000601150 PFN1P07737 140 aaKnown RBP11.82□□□□□ -0.52
TRIM28-215ENST00000601150 HOXA5P20719 270 aa11.82□□□□□ -0.52
TRIM28-215ENST00000601150 OR5I1Q13606 314 aa11.82□□□□□ -0.52
TRIM28-215ENST00000601150 POM121L12Q8N7R1 296 aa11.82□□□□□ -0.52
TRIM28-215ENST00000601150 HYDINQ4G0P3 5121 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 TRAV1-1A0A0B4J248 108 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 IGHV3-16A0A0C4DH30 117 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 TEX46H3BTG2 121 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 TYMSP04818 313 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 UBE2G1P62253 170 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 C11orf21Q9P2W6 132 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 ZFP30Q9Y2G7 519 aa11.81□□□□□ -0.52
TRIM28-215ENST00000601150 MUC4Q99102 2169 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 TRAV26-1A0A087WT03 109 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 TRBV6-1A0A0K0K1D8 114 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 NUDT3O95989 172 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 AKR1C3P42330 323 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 UBE2DNLQ8IWF7 75 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 MANBALQ9NQG1 85 aa11.8□□□□□ -0.52
TRIM28-215ENST00000601150 FABP5P3A8MUU1 101 aa11.79□□□□□ -0.52
TRIM28-215ENST00000601150 CCL20P78556 96 aa11.79□□□□□ -0.52
TRIM28-215ENST00000601150 RNF212Q495C1 297 aa11.79□□□□□ -0.52
TRIM28-215ENST00000601150 GNG13Q9P2W3 67 aa11.79□□□□□ -0.52
TRIM28-215ENST00000601150 VPS13DQ5THJ4 4388 aa11.78□□□□□ -0.52
TRIM28-215ENST00000601150 H3BNG1 76 aa11.78□□□□□ -0.52
TRIM28-215ENST00000601150 M0R2P5 195 aa11.78□□□□□ -0.52
TRIM28-215ENST00000601150 S100A9P06702 114 aaKnown RBP11.78□□□□□ -0.52
TRIM28-215ENST00000601150 COX8CQ7Z4L0 72 aa11.78□□□□□ -0.52
TRIM28-215ENST00000601150 RASL10AQ92737 203 aa11.78□□□□□ -0.52
TRIM28-215ENST00000601150 A0A0J9YY99 117 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 SCO2A0A1W2PP80 73 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 LTAP01374 205 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 IGHV3-53P01767 116 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 ZC2HC1AQ96GY0 325 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 NACAE9PAV3 2078 aa11.77□□□□□ -0.53
TRIM28-215ENST00000601150 SH2D1AO60880 128 aa11.75□□□□□ -0.53
TRIM28-215ENST00000601150 NKX2-5P52952 324 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-215ENST00000601150 SLAQ13239 276 aa11.75□□□□□ -0.53
TRIM28-215ENST00000601150 FAM162BQ5T6X4 162 aa11.75□□□□□ -0.53
TRIM28-215ENST00000601150 TXNDC17Q9BRA2 123 aa11.75□□□□□ -0.53
TRIM28-215ENST00000601150 IGKV3D-20A0A0C4DH25 116 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 IFNA1P01562 189 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 ORM1P02763 201 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 CRIP1P50238 77 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 FAM3BP58499 235 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-215ENST00000601150 FHL2Q14192 279 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 VSIG2Q96IQ7 327 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 C9orf85Q96MD7 179 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 PRO0255Q9UI72 69 aa11.74□□□□□ -0.53
TRIM28-215ENST00000601150 TRAV4A0A0B4J268 109 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 TRGV4A0A0C4DH28 118 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 B4DEV8 164 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 PAX4O43316 350 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 CCL18P55774 89 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 ALKAL2Q6UX46 152 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 C11orf52Q96A22 123 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 ZNF479Q96JC4 524 aa11.73□□□□□ -0.53
TRIM28-215ENST00000601150 C9JCJ5 164 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 SFTA3P0C7M3 94 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 RNASE3P12724 160 aaKnown RBP11.72□□□□□ -0.53
TRIM28-215ENST00000601150 S100A4P26447 101 aaKnown RBP11.72□□□□□ -0.53
TRIM28-215ENST00000601150 ASIPP42127 132 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 CRYBA4P53673 196 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 ZNF674Q2M3X9 581 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 ZNF876PQ49A33 203 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 BAGE2Q86Y30 109 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 NHLRC2Q8NBF2 726 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 OR4C5Q8NGB2 326 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 PTH2Q96A98 100 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 HHLA3Q9XRX5 114 aa11.72□□□□□ -0.53
TRIM28-215ENST00000601150 KRBOX1C9JBD0 128 aa11.71□□□□□ -0.53
TRIM28-215ENST00000601150 M0R036 132 aa11.71□□□□□ -0.53
TRIM28-215ENST00000601150 MEF2BQ02080 365 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-215ENST00000601150 A0A096LPF7 62 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 PDE6DO43924 150 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 BCL2P10415 239 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 TAGLN2P37802 199 aaKnown RBP11.7□□□□□ -0.54
TRIM28-215ENST00000601150 RPL35P42766 123 aaKnown RBP11.7□□□□□ -0.54
TRIM28-215ENST00000601150 BLOC1S1P78537 153 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 MLST8Q9BVC4 326 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 VAX2Q9UIW0 290 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 BOLA1Q9Y3E2 137 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 LINC00588Q9Y4M8 146 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 ICOSQ9Y6W8 199 aa11.7□□□□□ -0.54
TRIM28-215ENST00000601150 KMT2AQ03164 3969 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms