RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF705GA8MUZ8 300 aaPredicted RBP10.37□□□□□ -0.75
UPF1-211ENST00000600868 KRBOX1C9JBD0 128 aa10.37□□□□□ -0.75
UPF1-211ENST00000600868 ORM1P02763 201 aa10.37□□□□□ -0.75
UPF1-211ENST00000600868 NHLRC4P0CG21 123 aaPredicted RBP10.37□□□□□ -0.75
UPF1-211ENST00000600868 ZMAT4Q9H898 229 aa10.37□□□□□ -0.75
UPF1-211ENST00000600868 RETNQ9HD89 108 aa10.37□□□□□ -0.75
UPF1-211ENST00000600868 CARHSP1Q9Y2V2 147 aaKnown RBP10.37□□□□□ -0.75
UPF1-211ENST00000600868 B4DEV8 164 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 P01737 135 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 PRM2P04554 102 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 MIFP14174 115 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 HTN1P15515 57 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 ERVFC1-1P60608 527 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 RRN3P1Q2M238 152 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 IBA57Q5T440 356 aaKnown RBP10.36□□□□□ -0.75
UPF1-211ENST00000600868 ZNF493Q6ZR52 646 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 NUDT10Q8NFP7 164 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 NUDT11Q96G61 164 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 RNASE7Q9H1E1 156 aaKnown RBP10.36□□□□□ -0.75
UPF1-211ENST00000600868 OSTCQ9NRP0 149 aa10.36□□□□□ -0.75
UPF1-211ENST00000600868 TRGV11A0A075B6L2 103 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 TMEM189A5PLL7 270 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 CBY3A6NI87 242 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 M0R036 132 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 AZU1P20160 251 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 ZNF575Q86XF7 245 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 RNASE8Q8TDE3 154 aaKnown RBP10.35□□□□□ -0.75
UPF1-211ENST00000600868 TMEM263Q8WUH6 116 aaKnown RBP10.35□□□□□ -0.75
UPF1-211ENST00000600868 C16orf74Q96GX8 76 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 SFRP2Q96HF1 295 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 FBN3Q75N90 2809 aa10.35□□□□□ -0.75
UPF1-211ENST00000600868 GNRH2O43555 120 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 TYMSP04818 313 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 CXCL1P09341 107 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 RPS20P60866 119 aaKnown RBP10.34□□□□□ -0.75
UPF1-211ENST00000600868 DNLZQ5SXM8 178 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 C15orf54Q8N8G6 183 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 Q8NAQ8 132 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 OR2D3Q8NGH3 330 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 RPP21Q9H633 154 aaKnown RBP10.34□□□□□ -0.75
UPF1-211ENST00000600868 TP53TG3Q9ULZ0 132 aa10.34□□□□□ -0.75
UPF1-211ENST00000600868 IGHV3-16A0A0C4DH30 117 aa10.33□□□□□ -0.76
UPF1-211ENST00000600868 GATCO43716 136 aaKnown RBP10.33□□□□□ -0.76
UPF1-211ENST00000600868 RPL19P84098 196 aaKnown RBP10.33□□□□□ -0.76
UPF1-211ENST00000600868 CT83Q5H943 113 aa10.33□□□□□ -0.76
UPF1-211ENST00000600868 C11orf72Q8NBR9 251 aa10.33□□□□□ -0.76
UPF1-211ENST00000600868 OR10G8Q8NGN5 311 aa10.33□□□□□ -0.76
UPF1-211ENST00000600868 TMSB15BA0A087X1C1 80 aa10.32□□□□□ -0.76
UPF1-211ENST00000600868 IGHV4-28A0A0C4DH34 117 aa10.32□□□□□ -0.76
UPF1-211ENST00000600868 PLAC8L1A1L4L8 177 aa10.32□□□□□ -0.76
UPF1-211ENST00000600868 XKRY2A2RUG3 117 aa10.32□□□□□ -0.76
UPF1-211ENST00000600868 MDFICQ9P1T7 246 aa10.32□□□□□ -0.76
UPF1-211ENST00000600868 PPP1R2P9O14990 202 aa10.31□□□□□ -0.76
UPF1-211ENST00000600868 RNASE3P12724 160 aaKnown RBP10.31□□□□□ -0.76
UPF1-211ENST00000600868 ASIPP42127 132 aa10.31□□□□□ -0.76
UPF1-211ENST00000600868 TCL1AP56279 114 aa10.31□□□□□ -0.76
UPF1-211ENST00000600868 ZNF415Q09FC8 603 aa10.31□□□□□ -0.76
UPF1-211ENST00000600868 C11orf68Q9H3H3 251 aaKnown RBP10.31□□□□□ -0.76
UPF1-211ENST00000600868 V9GYV3 84 aa10.31□□□□□ -0.76
UPF1-211ENST00000600868 GRIFINA4D1Z8 144 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 A8MWL6 223 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 APOC3P02656 99 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 MT-ND4LP03901 98 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 MED14OSP0DP75 135 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 S100A4P26447 101 aaKnown RBP10.3□□□□□ -0.76
UPF1-211ENST00000600868 DAZ2Q13117 558 aaKnown RBP10.3□□□□□ -0.76
UPF1-211ENST00000600868 RNF212Q495C1 297 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 SVBPQ8N300 66 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 IL17DQ8TAD2 202 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 ANAPC16Q96DE5 110 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 C9orf85Q96MD7 179 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 SPXQ9BT56 116 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 GSN-AS1Q9NRJ2 163 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 IL36BQ9NZH7 164 aa10.3□□□□□ -0.76
UPF1-211ENST00000600868 TENM3Q9P273 2699 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 SNURFLB1AK76 121 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 GZMBP10144 247 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 CLRN3Q8NCR9 226 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 TSKUQ8WUA8 353 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 SSBP4Q9BWG4 385 aaPredicted RBP10.29□□□□□ -0.76
UPF1-211ENST00000600868 GFRA4Q9GZZ7 299 aa10.29□□□□□ -0.76
UPF1-211ENST00000600868 TIMM8BQ9Y5J9 83 aaPredicted RBP10.29□□□□□ -0.76
UPF1-211ENST00000600868 PRKDCP78527 4128 aaKnown RBP10.29□□□□□ -0.76
UPF1-211ENST00000600868 A0A1W2PPQ1 181 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 FAM231BA6NCW3 169 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 H3BVH4 76 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 DEFB4AO15263 64 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 SNAI2O43623 268 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 SNAPINO95295 136 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 OR5AL1P0C617 328 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 ARMS2P0C7Q2 107 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 IGLC6P0CF74 106 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 RHEBQ15382 184 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 CTDSP1Q9GZU7 261 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 SCRT2Q9NQ03 307 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 COL7A1Q02388 2944 aa10.28□□□□□ -0.76
UPF1-211ENST00000600868 A0A0J9YWU9 116 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 LYRM9A8MSI8 78 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 EMP1P54849 157 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 FOXA3P55318 350 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms