RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TRGV1A0A0A0MS02 117 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 GNRH2O43555 120 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 SPINK4O60575 86 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 GCGP01275 180 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 IFNA1P01562 189 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 ARL2-SNX15V9GYD0 113 aa10.71□□□□□ -0.69
LIG1-219ENST00000600055 FBLL1A6NHQ2 334 aaKnown RBP10.7□□□□□ -0.7
LIG1-219ENST00000600055 ZNF415Q09FC8 603 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 SMUG1Q53HV7 270 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 Q86TA4 180 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 FAM210BQ96KR6 192 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 TXNDC17Q9BRA2 123 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 MANBALQ9NQG1 85 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 MRPL16Q9NX20 251 aaKnown RBP10.7□□□□□ -0.7
LIG1-219ENST00000600055 C11orf21Q9P2W6 132 aa10.7□□□□□ -0.7
LIG1-219ENST00000600055 TRGV11A0A075B6L2 103 aa10.69□□□□□ -0.7
LIG1-219ENST00000600055 TDRG1Q3Y452 100 aa10.69□□□□□ -0.7
LIG1-219ENST00000600055 SAPCD1Q5SSQ6 148 aa10.69□□□□□ -0.7
LIG1-219ENST00000600055 TCEAL7Q9BRU2 100 aa10.69□□□□□ -0.7
LIG1-219ENST00000600055 TRGV2A0A075B6R0 118 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 IGHV3-16A0A0C4DH30 117 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 SCO2A0A1W2PP80 73 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 TYMSP04818 313 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 PFN1P07737 140 aaKnown RBP10.68□□□□□ -0.7
LIG1-219ENST00000600055 HOXA5P20719 270 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 AKR1C3P42330 323 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 GNG13Q9P2W3 67 aa10.68□□□□□ -0.7
LIG1-219ENST00000600055 UBE2G1P62253 170 aa10.67□□□□□ -0.7
LIG1-219ENST00000600055 OR5I1Q13606 314 aa10.67□□□□□ -0.7
LIG1-219ENST00000600055 FMC1Q96HJ9 113 aa10.67□□□□□ -0.7
LIG1-219ENST00000600055 SDF2L1Q9HCN8 221 aa10.67□□□□□ -0.7
LIG1-219ENST00000600055 IGHV3-53P01767 116 aa10.66□□□□□ -0.7
LIG1-219ENST00000600055 LGALS9BQ3B8N2 356 aa10.66□□□□□ -0.7
LIG1-219ENST00000600055 ZC2HC1AQ96GY0 325 aa10.66□□□□□ -0.7
LIG1-219ENST00000600055 KCNS1Q96KK3 526 aa10.66□□□□□ -0.7
LIG1-219ENST00000600055 A0A0J9YY99 117 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 TRBV6-1A0A0K0K1D8 114 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 NUDT3O95989 172 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 LTAP01374 205 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 CRIP1P50238 77 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 LYPD6BQ8NI32 183 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 C18orf15Q96N68 181 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 SPXQ9BT56 116 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 ZFP30Q9Y2G7 519 aa10.65□□□□□ -0.7
LIG1-219ENST00000600055 VPS13DQ5THJ4 4388 aa10.65□□□□□ -0.71
LIG1-219ENST00000600055 TRAV26-1A0A087WT03 109 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 P0DMU3 169 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 FAM231AP0DMU4 169 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 FAM231CP0DMU5 169 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 C15orf53Q8NAA6 179 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 NHLRC2Q8NBF2 726 aa10.64□□□□□ -0.71
LIG1-219ENST00000600055 IGKV3D-20A0A0C4DH25 116 aa10.63□□□□□ -0.71
LIG1-219ENST00000600055 FABP5P3A8MUU1 101 aa10.63□□□□□ -0.71
LIG1-219ENST00000600055 COX8CQ7Z4L0 72 aa10.63□□□□□ -0.71
LIG1-219ENST00000600055 RASL10AQ92737 203 aa10.63□□□□□ -0.71
LIG1-219ENST00000600055 VAX2Q9UIW0 290 aa10.63□□□□□ -0.71
LIG1-219ENST00000600055 KMT2AQ03164 3969 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 M0R2P5 195 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 PDE6DO43924 150 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 SH2D1AO60880 128 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 SFTA3P0C7M3 94 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 POM121L12Q8N7R1 296 aa10.62□□□□□ -0.71
LIG1-219ENST00000600055 RBFOX3A6NFN3 312 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 M0R036 132 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 ORM1P02763 201 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 S100A9P06702 114 aaKnown RBP10.61□□□□□ -0.71
LIG1-219ENST00000600055 BCL2P10415 239 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 RNASE3P12724 160 aaKnown RBP10.61□□□□□ -0.71
LIG1-219ENST00000600055 MEF2BQ02080 365 aaPredicted RBP10.61□□□□□ -0.71
LIG1-219ENST00000600055 ZNF674Q2M3X9 581 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 CLLU1Q5K131 121 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 BAGE2Q86Y30 109 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 UBE2DNLQ8IWF7 75 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 VSIG2Q96IQ7 327 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 ZNF479Q96JC4 524 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 C9orf85Q96MD7 179 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 DERL1Q9BUN8 251 aa10.61□□□□□ -0.71
LIG1-219ENST00000600055 EIF5A2Q9GZV4 153 aaKnown RBP10.61□□□□□ -0.71
LIG1-219ENST00000600055 B4DEV8 164 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 C9JCJ5 164 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 NDUFS6O75380 124 aaKnown RBP10.6□□□□□ -0.71
LIG1-219ENST00000600055 RPL35P42766 123 aaKnown RBP10.6□□□□□ -0.71
LIG1-219ENST00000600055 IFITM2Q01629 132 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 FHL2Q14192 279 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 FAM162BQ5T6X4 162 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 C11orf52Q96A22 123 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 SMDT1Q9H4I9 107 aa10.6□□□□□ -0.71
LIG1-219ENST00000600055 PGPEP1LA6NFU8 196 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 KRBOX1C9JBD0 128 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 PEA15Q15121 130 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 ZNF575Q86XF7 245 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 FAM210AQ96ND0 272 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 MLST8Q9BVC4 326 aa10.59□□□□□ -0.71
LIG1-219ENST00000600055 TMSB15BA0A087X1C1 80 aa10.58□□□□□ -0.72
LIG1-219ENST00000600055 GRIFINA4D1Z8 144 aa10.58□□□□□ -0.72
LIG1-219ENST00000600055 S100A4P26447 101 aaKnown RBP10.58□□□□□ -0.72
LIG1-219ENST00000600055 ASIPP42127 132 aa10.58□□□□□ -0.72
LIG1-219ENST00000600055 ZNF506Q5JVG8 444 aa10.58□□□□□ -0.72
LIG1-219ENST00000600055 OR4C5Q8NGB2 326 aa10.58□□□□□ -0.72
LIG1-219ENST00000600055 TRAV4A0A0B4J268 109 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms