RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NDUFS5O43920 106 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 SRSF3P84103 164 aaKnown RBP16.03■□□□□ 0.16
UPF1-207ENST00000599848 ZNF581Q9P0T4 197 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 ROS1P08922 2347 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 C5orf56Q8N8D9 126 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 ZNF503-AS2A6NEH8 195 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 IGLV2-23P01705 113 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 HILS1P60008 231 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 FHL1Q13642 323 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 LINC00479Q96M42 142 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 RNF144BQ7Z419 303 aa16.02■□□□□ 0.16
UPF1-207ENST00000599848 PLXNA3P51805 1871 aa16.02■□□□□ 0.15
UPF1-207ENST00000599848 C2orf70A6NJV1 201 aa16.02■□□□□ 0.15
UPF1-207ENST00000599848 CLPSL2Q6UWE3 100 aa16.02■□□□□ 0.15
UPF1-207ENST00000599848 SPATA25Q9BR10 227 aa16.01■□□□□ 0.15
UPF1-207ENST00000599848 C9JQL5 133 aa16.01■□□□□ 0.15
UPF1-207ENST00000599848 LGALS9BQ3B8N2 356 aa16.01■□□□□ 0.15
UPF1-207ENST00000599848 LGALS9CQ6DKI2 356 aa16.01■□□□□ 0.15
UPF1-207ENST00000599848 PKDREJQ9NTG1 2253 aa16.01■□□□□ 0.15
UPF1-207ENST00000599848 CXCL1P09341 107 aa16■□□□□ 0.15
UPF1-207ENST00000599848 HAMPP81172 84 aa16■□□□□ 0.15
UPF1-207ENST00000599848 C16orf54Q6UWD8 224 aa16■□□□□ 0.15
UPF1-207ENST00000599848 DOCK7Q96N67 2140 aa16■□□□□ 0.15
UPF1-207ENST00000599848 IGHG2P01859 326 aa16■□□□□ 0.15
UPF1-207ENST00000599848 APRG1Q8IVJ8 170 aa16■□□□□ 0.15
UPF1-207ENST00000599848 AGPAT4-IT1Q9H0P7 198 aa16■□□□□ 0.15
UPF1-207ENST00000599848 hDV102S1A0JD36 115 aa16■□□□□ 0.15
UPF1-207ENST00000599848 KIR2DL5BQ8NHK3 375 aa16■□□□□ 0.15
UPF1-207ENST00000599848 FXYD5Q96DB9 178 aa16■□□□□ 0.15
UPF1-207ENST00000599848 KIR3DS1Q14943 382 aa15.99■□□□□ 0.15
UPF1-207ENST00000599848 hADV29S1A0JD25 119 aa15.99■□□□□ 0.15
UPF1-207ENST00000599848 J3QQQ9 107 aa15.99■□□□□ 0.15
UPF1-207ENST00000599848 C11orf52Q96A22 123 aa15.99■□□□□ 0.15
UPF1-207ENST00000599848 PRSS47A8MTI9 375 aa15.99■□□□□ 0.15
UPF1-207ENST00000599848 IGHV4OR15-8A0A075B7B6 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 A0A087WW49 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 TNFRSF13BO14836 293 aaPredicted RBP15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGLV11-55A0A075B6I3 123 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 SPRY2O43597 315 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGHV3-30P01768 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGHV3-33P01772 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGHV3-30-3P0DP02 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGHV3-30-5P0DP03 117 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGHG4P01861 327 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IGLV3-1P01715 115 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 C11orf45Q8TAV5 145 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 FANCMQ8IYD8 2048 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 MGAMO43451 1857 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 IFITM1P13164 125 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 BLCAPP62952 87 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 HHLA3Q9XRX5 114 aa15.98■□□□□ 0.15
UPF1-207ENST00000599848 DNAJC9-AS1A6NH13 148 aa15.97■□□□□ 0.15
UPF1-207ENST00000599848 DIAPH2-AS1Q14236 149 aa15.97■□□□□ 0.15
UPF1-207ENST00000599848 ZSWIM8A7E2V4 1837 aa15.97■□□□□ 0.15
UPF1-207ENST00000599848 SMIM9A6NGZ8 99 aa15.97■□□□□ 0.15
UPF1-207ENST00000599848 CRYGCP07315 174 aa15.97■□□□□ 0.15
UPF1-207ENST00000599848 NBASA2RRP1 2371 aa15.96■□□□□ 0.15
UPF1-207ENST00000599848 IGLL5B9A064 214 aa15.96■□□□□ 0.15
UPF1-207ENST00000599848 AMTNQ6UX39 209 aa15.96■□□□□ 0.15
UPF1-207ENST00000599848 ADAMTSL5Q6ZMM2 481 aa15.96■□□□□ 0.15
UPF1-207ENST00000599848 ZC2HC1AQ96GY0 325 aa15.96■□□□□ 0.15
UPF1-207ENST00000599848 CREBBPQ92793 2442 aa15.96■□□□□ 0.14
UPF1-207ENST00000599848 Q8N9W7 124 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 C18orf32Q8TCD1 76 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 C1orf147Q96MC9 270 aaPredicted RBP15.95■□□□□ 0.14
UPF1-207ENST00000599848 SMIM27A0A1W2PRY6 76 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 LTAP01374 205 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 SPINK8P0C7L1 97 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 DEFB135Q30KP9 77 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 DYNAPQ8N1N2 210 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 ORMDL1Q9P0S3 153 aa15.95■□□□□ 0.14
UPF1-207ENST00000599848 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.95■□□□□ 0.144e-7■■■■□ 23
UPF1-207ENST00000599848 MED14OSP0DP75 135 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRR20EP86478 221 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRR20CP86479 221 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRR20DP86480 221 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRR20BP86481 221 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRR20AP86496 221 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 ATRAIDQ6UW56 229 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRO0255Q9UI72 69 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 PRO1854Q9UHT4 67 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 CITED2Q99967 270 aaPredicted RBP15.94■□□□□ 0.14
UPF1-207ENST00000599848 B9D2Q9BPU9 175 aa15.94■□□□□ 0.14
UPF1-207ENST00000599848 COLCA2A8K830 154 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 H0YGX0 51 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 GBF1Q92538 1859 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 RNF138Q8WVD3 245 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 A0A087X0K7 114 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 TRAV4A0A0B4J268 109 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 C11orf53Q8IXP5 236 aa15.93■□□□□ 0.14
UPF1-207ENST00000599848 TRAV26-2A0A0B4J265 109 aa15.92■□□□□ 0.14
UPF1-207ENST00000599848 WNK2Q9Y3S1 2297 aa15.92■□□□□ 0.14
UPF1-207ENST00000599848 A6NDX4 124 aa15.92■□□□□ 0.14
UPF1-207ENST00000599848 F6UB75 175 aa15.92■□□□□ 0.14
UPF1-207ENST00000599848 Q6ZVH6 145 aa15.92■□□□□ 0.14
UPF1-207ENST00000599848 GNRH2O43555 120 aa15.91■□□□□ 0.14
UPF1-207ENST00000599848 TMEM263Q8WUH6 116 aaKnown RBP15.91■□□□□ 0.14
UPF1-207ENST00000599848 TIMM17AQ99595 171 aa15.91■□□□□ 0.14
UPF1-207ENST00000599848 ZFP2Q6ZN57 461 aa15.91■□□□□ 0.14
UPF1-207ENST00000599848 TANC1Q9C0D5 1861 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms