RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LINC01587Q99440 93 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 PYGO2Q9BRQ0 406 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 TMEM208Q9BTX3 173 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 XCL2Q9UBD3 114 aa11.19□□□□□ -0.62
TRIM28-209ENST00000597423 IGHV1OR15-1A0A075B7D0 117 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 TMSB15BA0A087X1C1 80 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 UBE2CO00762 179 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 CRXO43186 299 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-209ENST00000597423 SCO1O75880 301 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 KIR3DS1Q14943 382 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 TDRG1Q3Y452 100 aa11.18□□□□□ -0.62
TRIM28-209ENST00000597423 IGKV3D-20A0A0C4DH25 116 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 F2Z2F3 143 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 CA1P00915 261 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-209ENST00000597423 S100A4P26447 101 aaKnown RBP11.17□□□□□ -0.62
TRIM28-209ENST00000597423 ASIPP42127 132 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 FOXA3P55318 350 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-209ENST00000597423 ANXA2RQ3ZCQ2 193 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 MUC21Q5SSG8 566 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 CBLN2Q8IUK8 224 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 LINC00467Q9BRT7 94 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 URGCP-MRPS24S4R325 110 aa11.17□□□□□ -0.62
TRIM28-209ENST00000597423 TRGV11A0A075B6L2 103 aa11.16□□□□□ -0.62
TRIM28-209ENST00000597423 A8MZ25 164 aa11.16□□□□□ -0.62
TRIM28-209ENST00000597423 IGHV4-30-4P0DP06 118 aa11.16□□□□□ -0.62
TRIM28-209ENST00000597423 FAM3BP58499 235 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-209ENST00000597423 NEU1Q99519 415 aa11.16□□□□□ -0.62
TRIM28-209ENST00000597423 CBY3A6NI87 242 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 HIGD1CA8MV81 97 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 TCL1AP56279 114 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 DNLZQ5SXM8 178 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 FER1L6-AS1Q8NA97 138 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 TPPP3Q9BW30 176 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 C11orf21Q9P2W6 132 aa11.15□□□□□ -0.62
TRIM28-209ENST00000597423 TRBV24-1A0A075B6N3 115 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 GRIFINA4D1Z8 144 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 MED14OSP0DP75 135 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 GZMBP10144 247 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 RIGQ13278 110 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 ELOBQ15370 118 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 KPRPQ5T749 579 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-209ENST00000597423 WDR73Q6P4I2 378 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 NUP35Q8NFH5 326 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 PGLYRP4Q96LB8 373 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 TRRAPQ9Y4A5 3859 aa11.14□□□□□ -0.63
TRIM28-209ENST00000597423 ANK2Q01484 3957 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 A0A1B0GW15 77 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 GNRH2O43555 120 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 S100A8P05109 93 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 HTN1P15515 57 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 COX19Q49B96 90 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 Q6ZQT7 251 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 GTSF1Q8WW33 167 aa11.13□□□□□ -0.63
TRIM28-209ENST00000597423 A0A1B0GUT8 65 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 TYMSP04818 313 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 GIG44P09565 113 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-209ENST00000597423 OR5AL1P0C617 328 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 CACNG7P62955 275 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 LYZL1Q6UWQ5 148 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 ATP5L2Q7Z4Y8 100 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 FAM210BQ96KR6 192 aa11.12□□□□□ -0.63
TRIM28-209ENST00000597423 IGHV3OR16-12A0A075B7B8 117 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 SMIM9A6NGZ8 99 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 ARMS2P0C7Q2 107 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 IGLC6P0CF74 106 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 RASL11AQ6T310 242 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 C1orf158Q8N1D5 194 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 CSNK1G2-AS1Q8NCQ2 148 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 SSBP4Q9BWG4 385 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-209ENST00000597423 PHLDA3Q9Y5J5 127 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 AGRNO00468 2067 aa11.11□□□□□ -0.63
TRIM28-209ENST00000597423 TGIF2-C20orf24A0A0A6YYL0 155 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 IGHV3-16A0A0C4DH30 117 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 COLCA2A8K830 154 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 RBMY1A1P0DJD3 496 aaKnown RBP11.1□□□□□ -0.63
TRIM28-209ENST00000597423 RBMY1CP0DJD4 496 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 CTRLP40313 264 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 ZNF415Q09FC8 603 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 RBMY1FQ15415 496 aaKnown RBP11.1□□□□□ -0.63
TRIM28-209ENST00000597423 ZNF493Q6ZR52 646 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 Q6ZWC4 215 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 YPEL4Q96NS1 127 aa11.1□□□□□ -0.63
TRIM28-209ENST00000597423 TIMM8BQ9Y5J9 83 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-209ENST00000597423 H3BVH4 76 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SNAI2O43623 268 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SPINK4O60575 86 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 RRN3P1Q2M238 152 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SPANXN1Q5VSR9 72 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 ZNF705AQ6ZN79 300 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SMIM15Q7Z3B0 74 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 ZNF575Q86XF7 245 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SYT8Q8NBV8 401 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 RCHY1Q96PM5 261 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 SPXQ9BT56 116 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 TP53TG3Q9ULZ0 132 aa11.09□□□□□ -0.63
TRIM28-209ENST00000597423 RAB5AP20339 215 aa11.08□□□□□ -0.64
TRIM28-209ENST00000597423 HBBP68871 147 aa11.08□□□□□ -0.64
TRIM28-209ENST00000597423 TWIST1Q15672 202 aa11.08□□□□□ -0.64
TRIM28-209ENST00000597423 MRPL54Q6P161 138 aaKnown RBP11.08□□□□□ -0.64
TRIM28-209ENST00000597423 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms