RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PRNTQ86SH4 94 aa11.29□□□□□ -0.6
TRIM28-206ENST00000595974 HIST1H2BAQ96A08 127 aa11.29□□□□□ -0.6
TRIM28-206ENST00000595974 C8orf49Q96NF6 230 aa11.29□□□□□ -0.6
TRIM28-206ENST00000595974 ARL2-SNX15V9GYD0 113 aa11.29□□□□□ -0.6
TRIM28-206ENST00000595974 IGLV2-18A0A075B6J9 118 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 IGHV3-16A0A0C4DH30 117 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 M0R2N4 97 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 PFDN1O60925 122 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 GCGP01275 180 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 TYMSP04818 313 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 PFN1P07737 140 aaKnown RBP11.28□□□□□ -0.6
TRIM28-206ENST00000595974 FHITP49789 147 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 Q6ZR54 194 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 LINC00336Q6ZUF6 198 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 TMUB2Q71RG4 321 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 TCTE3Q8IZS6 198 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 RASL10AQ92737 203 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 TCEAL7Q9BRU2 100 aa11.28□□□□□ -0.6
TRIM28-206ENST00000595974 IGHV3-53P01767 116 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 TPT1P13693 172 aaKnown RBP11.27□□□□□ -0.61
TRIM28-206ENST00000595974 ZNF80P51504 273 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-206ENST00000595974 SLAQ13239 276 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 DPPA3Q6W0C5 159 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 ZNRF2Q8NHG8 242 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 FAM213BQ8TBF2 198 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 VSIG2Q96IQ7 327 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 LINC00588Q9Y4M8 146 aa11.27□□□□□ -0.61
TRIM28-206ENST00000595974 M0R2P5 195 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 GNRH2O43555 120 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 Q6ZNX1 250 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 Q86TA4 180 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 MBD3L1Q8WWY6 194 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 LINC00479Q96M42 142 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 PRO0255Q9UI72 69 aa11.26□□□□□ -0.61
TRIM28-206ENST00000595974 HECTD4Q9Y4D8 3996 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 TRAV34A0A0B4J273 112 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 PAX4O43316 350 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 SFT2D1Q8WV19 159 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 C11orf21Q9P2W6 132 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 DNAH2Q9P225 4427 aa11.25□□□□□ -0.61
TRIM28-206ENST00000595974 A0A096LPF7 62 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 TRAV4A0A0B4J268 109 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 FHL2Q14192 279 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 CST9LP1Q5W188 147 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 FMC1Q96HJ9 113 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 ICOSQ9Y6W8 199 aa11.24□□□□□ -0.61
TRIM28-206ENST00000595974 TRGV4A0A0C4DH28 118 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 SFTA3P0C7M3 94 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 CRYBA4P53673 196 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 UBE2G1P62253 170 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 LGALSLQ3ZCW2 172 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-206ENST00000595974 SOHLH1Q5JUK2 328 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 UPK3BQ9BT76 320 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 HHLA3Q9XRX5 114 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 ZFP30Q9Y2G7 519 aa11.23□□□□□ -0.61
TRIM28-206ENST00000595974 MRPS16Q9Y3D3 137 aaKnown RBP11.23□□□□□ -0.61
TRIM28-206ENST00000595974 TRBV6-1A0A0K0K1D8 114 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 NBDYA0A0U1RRE5 68 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 RTL8CO15255 209 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 PAGE4O60829 102 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 C1QBP02746 253 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 H2AFB1P0C5Y9 115 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 ESRGQ1W209 222 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 EIF5AL1Q6IS14 154 aaKnown RBP11.22□□□□□ -0.61
TRIM28-206ENST00000595974 COX8CQ7Z4L0 72 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 ZNF479Q96JC4 524 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 FAT2Q9NYQ8 4349 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 DNAH17Q9UFH2 4485 aa11.22□□□□□ -0.61
TRIM28-206ENST00000595974 A0A1B0GV50 99 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 FABP5P3A8MUU1 101 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 AKR1C3P42330 323 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 RAB5CP51148 216 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 OR4C5Q8NGB2 326 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 C9orf85Q96MD7 179 aa11.21□□□□□ -0.61
TRIM28-206ENST00000595974 MRPL23Q16540 153 aaKnown RBP11.2□□□□□ -0.62
TRIM28-206ENST00000595974 ZNF876PQ49A33 203 aa11.2□□□□□ -0.62
TRIM28-206ENST00000595974 C1orf134Q5TEV5 83 aa11.2□□□□□ -0.62
TRIM28-206ENST00000595974 ZC2HC1AQ96GY0 325 aa11.2□□□□□ -0.62
TRIM28-206ENST00000595974 LTAP01374 205 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 ORM1P02763 201 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 RNASE3P12724 160 aaKnown RBP11.19□□□□□ -0.62
TRIM28-206ENST00000595974 TTC32Q5I0X7 151 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 AKAP14Q86UN6 197 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 PCNPQ8WW12 178 aaKnown RBP11.19□□□□□ -0.62
TRIM28-206ENST00000595974 PTH2Q96A98 100 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 Q9H8V8 135 aa11.19□□□□□ -0.62
TRIM28-206ENST00000595974 IGKV3D-20A0A0C4DH25 116 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 PRSS29PA6NIE9 313 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 C9JCJ5 164 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 CIDEAO60543 219 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 S100A9P06702 114 aaKnown RBP11.18□□□□□ -0.62
TRIM28-206ENST00000595974 FAM162BQ5T6X4 162 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 SLC51BQ86UW2 128 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 MANBALQ9NQG1 85 aa11.18□□□□□ -0.62
TRIM28-206ENST00000595974 TRAV1-1A0A0B4J248 108 aa11.17□□□□□ -0.62
TRIM28-206ENST00000595974 B4DEV8 164 aa11.17□□□□□ -0.62
TRIM28-206ENST00000595974 S100A4P26447 101 aaKnown RBP11.17□□□□□ -0.62
TRIM28-206ENST00000595974 ASIPP42127 132 aa11.17□□□□□ -0.62
TRIM28-206ENST00000595974 SULT1A2P50226 295 aa11.17□□□□□ -0.62
TRIM28-206ENST00000595974 ZNF506Q5JVG8 444 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms