RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SPXQ9BT56 116 aa18.24■□□□□ 0.51
TRIM28-204ENST00000594806 DYNC2H1Q8NCM8 4307 aaKnown RBP18.23■□□□□ 0.51
TRIM28-204ENST00000594806 FABP5P3A8MUU1 101 aa18.23■□□□□ 0.51
TRIM28-204ENST00000594806 SPINK4O60575 86 aa18.23■□□□□ 0.51
TRIM28-204ENST00000594806 LTAP01374 205 aa18.23■□□□□ 0.51
TRIM28-204ENST00000594806 APLNQ9ULZ1 77 aa18.23■□□□□ 0.51
TRIM28-204ENST00000594806 SCO2A0A1W2PP80 73 aa18.22■□□□□ 0.51
TRIM28-204ENST00000594806 HTN3P15516 51 aa18.22■□□□□ 0.51
TRIM28-204ENST00000594806 C11orf52Q96A22 123 aa18.22■□□□□ 0.51
TRIM28-204ENST00000594806 NDUFAF3Q9BU61 184 aa18.22■□□□□ 0.51
TRIM28-204ENST00000594806 GAGE12BA1L429 117 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 GAGE7O76087 117 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 GAGE12FP0CL80 117 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 GAGE12GP0CL81 117 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 GAGE12IP0CL82 117 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 MEF2BQ02080 365 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-204ENST00000594806 Q6ZTI0 123 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 MDFICQ9P1T7 246 aa18.21■□□□□ 0.51
TRIM28-204ENST00000594806 TRGV1A0A0A0MS02 117 aa18.2■□□□□ 0.5
TRIM28-204ENST00000594806 PDE6DO43924 150 aa18.2■□□□□ 0.5
TRIM28-204ENST00000594806 BCL2P10415 239 aa18.2■□□□□ 0.5
TRIM28-204ENST00000594806 LYPD6BQ8NI32 183 aa18.2■□□□□ 0.5
TRIM28-204ENST00000594806 VAX2Q9UIW0 290 aa18.2■□□□□ 0.5
TRIM28-204ENST00000594806 TYMSP04818 313 aa18.19■□□□□ 0.5
TRIM28-204ENST00000594806 TRGV2A0A075B6R0 118 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 IGHV3-16A0A0C4DH30 117 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 F5H768 121 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 GNRH2O43555 120 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 LGALS9CQ6DKI2 356 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 LINC00476Q8WZB0 136 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 ZC2HC1AQ96GY0 325 aa18.18■□□□□ 0.5
TRIM28-204ENST00000594806 FAM162BQ5T6X4 162 aa18.17■□□□□ 0.5
TRIM28-204ENST00000594806 C11orf21Q9P2W6 132 aa18.17■□□□□ 0.5
TRIM28-204ENST00000594806 ZNF674Q2M3X9 581 aa18.16■□□□□ 0.5
TRIM28-204ENST00000594806 BAGE2Q86Y30 109 aa18.16■□□□□ 0.5
TRIM28-204ENST00000594806 RASL10AQ92737 203 aa18.16■□□□□ 0.5
TRIM28-204ENST00000594806 KMT2CQ8NEZ4 4911 aaKnown RBP18.15■□□□□ 0.5
TRIM28-204ENST00000594806 RPL35P42766 123 aaKnown RBP18.15■□□□□ 0.5
TRIM28-204ENST00000594806 C15orf53Q8NAA6 179 aa18.15■□□□□ 0.5
TRIM28-204ENST00000594806 MUC4Q99102 2169 aa18.15■□□□□ 0.5
TRIM28-204ENST00000594806 M0R2P5 195 aa18.14■□□□□ 0.49
TRIM28-204ENST00000594806 CRIP1P50238 77 aa18.14■□□□□ 0.49
TRIM28-204ENST00000594806 TMEM88Q6PEY1 159 aa18.14■□□□□ 0.49
TRIM28-204ENST00000594806 MLST8Q9BVC4 326 aa18.14■□□□□ 0.49
TRIM28-204ENST00000594806 PLECQ15149 4684 aaKnown RBP18.14■□□□□ 0.49
TRIM28-204ENST00000594806 MRPL16Q9NX20 251 aaKnown RBP18.13■□□□□ 0.49
TRIM28-204ENST00000594806 IGKV3D-20A0A0C4DH25 116 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 SH2D1AO60880 128 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 LY6G6CO95867 125 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 ORM1P02763 201 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 TEX261Q6UWH6 196 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 SMIM12Q96EX1 92 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 MED9Q9NWA0 146 aa18.12■□□□□ 0.49
TRIM28-204ENST00000594806 RBFOX3A6NFN3 312 aa18.11■□□□□ 0.49
TRIM28-204ENST00000594806 DNLZQ5SXM8 178 aa18.11■□□□□ 0.49
TRIM28-204ENST00000594806 LYSTQ99698 3801 aa18.1■□□□□ 0.49
TRIM28-204ENST00000594806 B4DEV8 164 aa18.1■□□□□ 0.49
TRIM28-204ENST00000594806 OR5I1Q13606 314 aa18.1■□□□□ 0.49
TRIM28-204ENST00000594806 PTH2Q96A98 100 aa18.1■□□□□ 0.49
TRIM28-204ENST00000594806 C9orf85Q96MD7 179 aa18.1■□□□□ 0.49
TRIM28-204ENST00000594806 KRBOX1C9JBD0 128 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 H3BNG1 76 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 NDUFS6O75380 124 aaKnown RBP18.09■□□□□ 0.49
TRIM28-204ENST00000594806 P0DMU3 169 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 FAM231AP0DMU4 169 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 FAM231CP0DMU5 169 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 S100A4P26447 101 aaKnown RBP18.09■□□□□ 0.49
TRIM28-204ENST00000594806 ASIPP42127 132 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 SLAQ13239 276 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 LINC01559Q495D7 138 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 NHLRC2Q8NBF2 726 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 DERL1Q9BUN8 251 aa18.09■□□□□ 0.49
TRIM28-204ENST00000594806 HOXA5P20719 270 aa18.08■□□□□ 0.48
TRIM28-204ENST00000594806 ZNF506Q5JVG8 444 aa18.08■□□□□ 0.48
TRIM28-204ENST00000594806 TMEM250H0YL14 139 aa18.07■□□□□ 0.48
TRIM28-204ENST00000594806 RNASE3P12724 160 aaKnown RBP18.07■□□□□ 0.48
TRIM28-204ENST00000594806 GNG4P50150 75 aa18.07■□□□□ 0.48
TRIM28-204ENST00000594806 CENPWQ5EE01 88 aa18.07■□□□□ 0.48
TRIM28-204ENST00000594806 IL36BQ9NZH7 164 aa18.07■□□□□ 0.48
TRIM28-204ENST00000594806 ALMS1Q8TCU4 4167 aa18.07■□□□□ 0.48
TRIM28-204ENST00000594806 PIK3CD-AS1Q5SR53 167 aa18.06■□□□□ 0.48
TRIM28-204ENST00000594806 BIN3Q9NQY0 253 aa18.06■□□□□ 0.48
TRIM28-204ENST00000594806 TRAV4A0A0B4J268 109 aa18.05■□□□□ 0.48
TRIM28-204ENST00000594806 M0R036 132 aa18.05■□□□□ 0.48
TRIM28-204ENST00000594806 CIDEAO60543 219 aa18.05■□□□□ 0.48
TRIM28-204ENST00000594806 TRAV26-1A0A087WT03 109 aa18.04■□□□□ 0.48
TRIM28-204ENST00000594806 CXCL1P09341 107 aa18.04■□□□□ 0.48
TRIM28-204ENST00000594806 ZNF876PQ49A33 203 aa18.04■□□□□ 0.48
TRIM28-204ENST00000594806 FAM210AQ96ND0 272 aa18.04■□□□□ 0.48
TRIM28-204ENST00000594806 RAB19A4D1S5 217 aa18.03■□□□□ 0.48
TRIM28-204ENST00000594806 OR4C5Q8NGB2 326 aa18.03■□□□□ 0.48
TRIM28-204ENST00000594806 EIF5A2Q9GZV4 153 aaKnown RBP18.03■□□□□ 0.48
TRIM28-204ENST00000594806 IGLV2-8P01709 118 aa18.02■□□□□ 0.48
TRIM28-204ENST00000594806 RNF212Q495C1 297 aa18.02■□□□□ 0.48
TRIM28-204ENST00000594806 PRO0255Q9UI72 69 aa18.02■□□□□ 0.48
TRIM28-204ENST00000594806 SACSQ9NZJ4 4579 aa18.01■□□□□ 0.47
TRIM28-204ENST00000594806 C9JCJ5 164 aa18.01■□□□□ 0.47
TRIM28-204ENST00000594806 NUDT3O95989 172 aa18.01■□□□□ 0.47
TRIM28-204ENST00000594806 IGHV3-53P01767 116 aa18.01■□□□□ 0.47
TRIM28-204ENST00000594806 FHL2Q14192 279 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 309.7 ms