RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PIK3CD-AS1Q5SR53 167 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 SSX7Q7RTT5 188 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 CYB561D1Q8N8Q1 229 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 SH3BGRL3Q9H299 93 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 Q9H8V8 135 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 SDF2L1Q9HCN8 221 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 LRP1BQ9NZR2 4599 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 HHLA3Q9XRX5 114 aa7.31□□□□□ -1.24
LIG3-212ENST00000590181 APOBP04114 4563 aaKnown RBP7.3□□□□□ -1.24
LIG3-212ENST00000590181 PAX4O43316 350 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 PFN1P07737 140 aaKnown RBP7.3□□□□□ -1.24
LIG3-212ENST00000590181 HOXA5P20719 270 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 LGALSLQ3ZCW2 172 aaPredicted RBP7.3□□□□□ -1.24
LIG3-212ENST00000590181 SMUG1Q53HV7 270 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 Q5BKY6 102 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 RPL7L1Q6DKI1 246 aaKnown RBP7.3□□□□□ -1.24
LIG3-212ENST00000590181 DPPA3Q6W0C5 159 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 Q8TAT8 98 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 MRPS16Q9Y3D3 137 aaKnown RBP7.3□□□□□ -1.24
LIG3-212ENST00000590181 LINC00588Q9Y4M8 146 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 ICOSQ9Y6W8 199 aa7.3□□□□□ -1.24
LIG3-212ENST00000590181 IGLV2-18A0A075B6J9 118 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 TRAV9-2A0A087WT02 112 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 TRAV4A0A0B4J268 109 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 SEC11BP0C7V7 166 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 FLI1Q01543 452 aaPredicted RBP7.29□□□□□ -1.24
LIG3-212ENST00000590181 TMEM183BQ1AE95 376 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 PRR9Q5T870 116 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 TMEM183AQ8IXX5 376 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 MAPKAPK5-AS1Q8N8E1 139 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 ZFP30Q9Y2G7 519 aa7.29□□□□□ -1.24
LIG3-212ENST00000590181 TRGV4A0A0C4DH28 118 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 FABP5P3A8MUU1 101 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 C9JCJ5 164 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 ARPC5O15511 151 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 S100A9P06702 114 aaKnown RBP7.28□□□□□ -1.24
LIG3-212ENST00000590181 PRB4P10163 310 aaPredicted RBP7.28□□□□□ -1.24
LIG3-212ENST00000590181 CRYBA4P53673 196 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 NEGR1Q7Z3B1 354 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 C6orf223Q8N319 242 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 KCNRGQ8N5I3 272 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 PCNPQ8WW12 178 aaKnown RBP7.28□□□□□ -1.24
LIG3-212ENST00000590181 VSIG2Q96IQ7 327 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 TXNDC17Q9BRA2 123 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 PSG8Q9UQ74 426 aa7.28□□□□□ -1.24
LIG3-212ENST00000590181 A0A096LPF7 62 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 IGHV3-16A0A0C4DH30 117 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 A0A0J9YY99 117 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 HMGB3O15347 200 aaKnown RBP7.27□□□□□ -1.25
LIG3-212ENST00000590181 IFNA7P01567 189 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 TIRAPP58753 221 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 FHL2Q14192 279 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 ESRGQ1W209 222 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 MUC21Q5SSG8 566 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 EIF5AL1Q6IS14 154 aaKnown RBP7.27□□□□□ -1.25
LIG3-212ENST00000590181 COX8CQ7Z4L0 72 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 OR4C5Q8NGB2 326 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 MDFICQ9P1T7 246 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 RPH3ALQ9UNE2 315 aa7.27□□□□□ -1.25
LIG3-212ENST00000590181 DMBT1Q9UGM3 2413 aaPredicted RBP7.27□□□□□ -1.25
LIG3-212ENST00000590181 TRBV6-1A0A0K0K1D8 114 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 KANTRA0A1W2PQU2 76 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 C16orf90A8MZG2 172 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 GGTLC3B5MD39 225 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 SIVA1O15304 175 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 CDK2AP2O75956 126 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 TVP23CQ96ET8 276 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 FMC1Q96HJ9 113 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 CYTL1Q9NRR1 136 aa7.26□□□□□ -1.25
LIG3-212ENST00000590181 TRAV8-1A0A0A6YYK1 113 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 MAP1LC3B2A6NCE7 125 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 FAM74A7A6NL05 159 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 G3V3Q6 166 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 TEX46H3BTG2 121 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 GCGP01275 180 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 IGLV2-11P01706 119 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 SRIP30626 198 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 RAB5CP51148 216 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 DNLZQ5SXM8 178 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 NFE4Q86UQ8 179 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 MBD3L1Q8WWY6 194 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 MAP1LC3BQ9GZQ8 125 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 MRPL16Q9NX20 251 aaKnown RBP7.25□□□□□ -1.25
LIG3-212ENST00000590181 NAGKQ9UJ70 344 aa7.25□□□□□ -1.25
LIG3-212ENST00000590181 TRBV6-4A0A1B0GX49 114 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 PEX7O00628 323 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 GNRH2O43555 120 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 TYMSP04818 313 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 GNG5P63218 68 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 ZNF726P1Q15940 193 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 ZNF876PQ49A33 203 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 LYPD5Q6UWN5 251 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 ZFP2Q6ZN57 461 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 PRNTQ86SH4 94 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 C10orf126Q8N4M7 172 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 PRADC1Q9BSG0 188 aa7.24□□□□□ -1.25
LIG3-212ENST00000590181 DNAH5Q8TE73 4624 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 A8MWV9 139 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 BCL2L11O43521 198 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 MGST1P10620 155 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms