RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 J3QLI3 93 aa9.53□□□□□ -0.88
SMARCA4-208ENST00000585799 CHCHD1Q96BP2 118 aaKnown RBP9.53□□□□□ -0.88
SMARCA4-208ENST00000585799 GOLT1BQ9Y3E0 138 aa9.53□□□□□ -0.88
SMARCA4-208ENST00000585799 HRNRQ86YZ3 2850 aaPredicted RBP9.52□□□□□ -0.88
SMARCA4-208ENST00000585799 IGHV4-31P0DP07 118 aa9.52□□□□□ -0.88
SMARCA4-208ENST00000585799 HOXD3P31249 432 aaPredicted RBP9.52□□□□□ -0.88
SMARCA4-208ENST00000585799 CBY3A6NI87 242 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 SYS1-DBNDD2H3BUS1 97 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 MRPS12O15235 138 aaKnown RBP9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 LINC00310P59036 64 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 FOXC2Q99958 501 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 SIGLEC8Q9NYZ4 499 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 ZNF256Q9Y2P7 627 aaPredicted RBP9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 TMEM160Q9NX00 188 aa9.52□□□□□ -0.89
SMARCA4-208ENST00000585799 DCHS2Q6V1P9 2916 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 IGHV4OR15-8A0A075B7B6 117 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 TRAV9-2A0A087WT02 112 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 A0A087WW49 117 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 IGHV3-73A0A0B4J1V6 119 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 A0A1B0GXF2 115 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 CLPSL1A2RUU4 121 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 NSUN5P1Q3KNT7 163 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 ITPR3Q14573 2671 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 KNCNA6PVL3 124 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 TCF21O43680 179 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 HBDP02042 147 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 CRYBG3Q68DQ2 2970 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 C20orf173Q96LM9 149 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 UTP20O75691 2785 aaKnown RBP9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 TNFRSF6BO95407 300 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 SLC25A34Q6PIV7 304 aa9.51□□□□□ -0.89
SMARCA4-208ENST00000585799 VAMP3Q15836 100 aa9.5□□□□□ -0.89
SMARCA4-208ENST00000585799 IFI27L1Q96BM0 104 aa9.5□□□□□ -0.89
SMARCA4-208ENST00000585799 TSPOP30536 169 aa9.5□□□□□ -0.89
SMARCA4-208ENST00000585799 NEGR1Q7Z3B1 354 aa9.5□□□□□ -0.89
SMARCA4-208ENST00000585799 AGRNO00468 2067 aa9.49□□□□□ -0.89
SMARCA4-208ENST00000585799 LOXL1Q08397 574 aaPredicted RBP9.49□□□□□ -0.89
SMARCA4-208ENST00000585799 TMEM158Q8WZ71 300 aa9.49□□□□□ -0.89
SMARCA4-208ENST00000585799 MS4A6AQ9H2W1 248 aa9.49□□□□□ -0.89
SMARCA4-208ENST00000585799 TRAV8-2A0A0B4J237 113 aa9.49□□□□□ -0.89
SMARCA4-208ENST00000585799 STPG4Q8N801 248 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 IGKV3D-20A0A0C4DH25 116 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 ZNF418Q8TF45 676 aaPredicted RBP9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 UBE2E2Q96LR5 201 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 LINC01587Q99440 93 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 H3BUA1 57 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 PPBPP02775 128 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 IGLL1P15814 213 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 PTTG1IPP53801 180 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 C18orf65Q6ZTR6 163 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 OR1N2Q8NGR9 330 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 OR2K2Q8NGT1 345 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 SNHG12Q9BXW3 62 aa9.48□□□□□ -0.89
SMARCA4-208ENST00000585799 RAX2Q96IS3 184 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 PEMTQ9UBM1 199 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 TRAV8-6A0A0B4J262 113 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 KLF5Q13887 457 aaPredicted RBP9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 C11orf21Q9P2W6 132 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 LAMTOR2Q9Y2Q5 125 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 ZANQ9Y493 2812 aa9.47□□□□□ -0.89
SMARCA4-208ENST00000585799 NPIPB6E9PJ23 425 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 ELANEP08246 267 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 COL5A1-AS1Q5SY13 56 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 PET117Q6UWS5 81 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 SYT8Q8NBV8 401 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 SCGB3A1Q96QR1 104 aa9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 SPENQ96T58 3664 aaKnown RBP9.46□□□□□ -0.89
SMARCA4-208ENST00000585799 LGALS1P09382 135 aaKnown RBP9.46□□□□□ -0.9
SMARCA4-208ENST00000585799 TEX43Q6ZNM6 134 aa9.46□□□□□ -0.9
SMARCA4-208ENST00000585799 NXT2Q9NPJ8 142 aaKnown RBP9.46□□□□□ -0.9
SMARCA4-208ENST00000585799 TP73-AS1Q9UF72 201 aa9.46□□□□□ -0.9
SMARCA4-208ENST00000585799 A0A087X0K7 114 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 GAS8-AS1O95177 125 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 IGHG4P01861 327 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 LINC01619G3V211 115 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 SAP30O75446 220 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 SRSF2Q01130 221 aaKnown RBP9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 PRR9Q5T870 116 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 APRG1Q8IVJ8 170 aa9.45□□□□□ -0.9
SMARCA4-208ENST00000585799 EMP1P54849 157 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 DPH3P1Q9H4G8 78 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 XCL2Q9UBD3 114 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 DUSP14O95147 198 aaKnown RBP9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 IGLC3P0DOY3 106 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 DNLZQ5SXM8 178 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 TEX29Q8N6K0 151 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 RAB37Q96AX2 223 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 JPT2Q9H910 190 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 TRBV6-1A0A0K0K1D8 114 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 RBAKDNA6NC62 111 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 C9orf47Q6ZRZ4 202 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 C20orf144Q9BQM9 153 aa9.44□□□□□ -0.9
SMARCA4-208ENST00000585799 PF4P02776 101 aa9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 KIR2DL4Q99706 377 aa9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 SRSF1Q07955 248 aaKnown RBP eCLIP9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 ZNF876PQ49A33 203 aa9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 GTSCR1Q86UQ5 136 aa9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 RPL39LQ96EH5 51 aaKnown RBP9.43□□□□□ -0.9
SMARCA4-208ENST00000585799 ESDP10768 282 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms