RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 MIC13Q5XKP0 118 aa6.39□□□□□ -1.39
CIITA-208ENST00000572665 SPATA12Q7Z6I5 190 aa6.39□□□□□ -1.39
CIITA-208ENST00000572665 LINC00467Q9BRT7 94 aa6.39□□□□□ -1.39
CIITA-208ENST00000572665 C11orf1Q9H5F2 150 aa6.39□□□□□ -1.39
CIITA-208ENST00000572665 ALG5Q9Y673 324 aa6.39□□□□□ -1.39
CIITA-208ENST00000572665 TRGV1A0A0A0MS02 117 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 FAM24AA6NFZ4 105 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 SSNA1O43805 119 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 FGF7P21781 194 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 ESRGQ1W209 222 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 IBA57Q5T440 356 aaKnown RBP6.38□□□□□ -1.39
CIITA-208ENST00000572665 NFE4Q86UQ8 179 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 PARD6GQ9BYG4 376 aaPredicted RBP6.38□□□□□ -1.39
CIITA-208ENST00000572665 NMES1Q9C002 83 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 ZNF586Q9NXT0 402 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 FUT9Q9Y231 359 aa6.38□□□□□ -1.39
CIITA-208ENST00000572665 PKHD1P08F94 4074 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 TRAV9-2A0A087WT02 112 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 TRAV5A0A0B4J249 113 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 TRBV7-9A0A0J9YWB2 115 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 KLLNB2CW77 178 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 K7EP13 123 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 SIVA1O15304 175 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 SIX6O95475 246 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 CSN1S1P47710 185 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 CYCSP99999 105 aaKnown RBP6.37□□□□□ -1.39
CIITA-208ENST00000572665 Q6ZTI0 123 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 TMEM252Q8N6L7 170 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 SGK494Q96LW2 274 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 SLC25A31Q9H0C2 315 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 GSN-AS1Q9NRJ2 163 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 ICOSQ9Y6W8 199 aa6.37□□□□□ -1.39
CIITA-208ENST00000572665 C17orf112F2Z3M2 114 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 SPINK4O60575 86 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 PRB4P10163 310 aaPredicted RBP6.36□□□□□ -1.39
CIITA-208ENST00000572665 CRISP2P16562 243 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 RNASE4P34096 147 aaKnown RBP6.36□□□□□ -1.39
CIITA-208ENST00000572665 TCL1AP56279 114 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 ZNF415Q09FC8 603 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 PRR27Q6MZM9 219 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 BLNKQ8WV28 456 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 ST6GAL2Q96JF0 529 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 NPCDR1Q9BY65 106 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 MRPL32Q9BYC8 188 aaKnown RBP6.36□□□□□ -1.39
CIITA-208ENST00000572665 PRO0255Q9UI72 69 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 KIAA1109Q2LD37 5005 aa6.36□□□□□ -1.39
CIITA-208ENST00000572665 PCLOQ9Y6V0 5065 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 FAT2Q9NYQ8 4349 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 IGHV1OR15-1A0A075B7D0 117 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 A0A096LPF7 62 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 M0R3E3 92 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 ZNF324O75467 553 aaPredicted RBP6.35□□□□□ -1.39
CIITA-208ENST00000572665 NBEAP1P0C6P0 100 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 ERCC8Q13216 396 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 BTN1A1Q13410 526 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 MRPL23Q16540 153 aaKnown RBP6.35□□□□□ -1.39
CIITA-208ENST00000572665 LCE1AQ5T7P2 110 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 EXOC3-AS1Q8N2X6 119 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 C11orf72Q8NBR9 251 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 PPP1R1CQ8WVI7 109 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 PCNPQ8WW12 178 aaKnown RBP6.35□□□□□ -1.39
CIITA-208ENST00000572665 FAM19A4Q96LR4 140 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 AGPAT4-IT1Q9H0P7 198 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 OR51M1Q9H341 326 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 HHLA3Q9XRX5 114 aa6.35□□□□□ -1.39
CIITA-208ENST00000572665 DNAH17Q9UFH2 4485 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 DNAH2Q9P225 4427 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 IGSF23A1L1A6 192 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 RBAKDNA6NC62 111 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 E5RGE8 158 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 PYYP10082 97 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 ZNF138P52744 262 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 RPL36AP83881 106 aaKnown RBP6.34□□□□□ -1.39
CIITA-208ENST00000572665 CD300CQ08708 224 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 FAM74A1Q5RGS3 127 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 NEGR1Q7Z3B1 354 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 LYPD1Q8N2G4 141 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 OR5C1Q8NGR4 320 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 ASB13Q8WXK3 278 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 VSIG2Q96IQ7 327 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 VGLL1Q99990 258 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 PAXXQ9BUH6 204 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 MED28Q9H204 178 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 SCRT2Q9NQ03 307 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 OR5AC2Q9NZP5 309 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 ZNF492Q9P255 531 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 KLF12Q9Y4X4 402 aa6.34□□□□□ -1.39
CIITA-208ENST00000572665 TRGV4A0A0C4DH28 118 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 OR7C2O60412 319 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 NXPH4O95158 308 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 MPC2O95563 127 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 ORM1P02763 201 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 GIPP09681 153 aaPredicted RBP6.33□□□□□ -1.4
CIITA-208ENST00000572665 PET100P0DJ07 73 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 LINC00315P59091 139 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 TAS2R45P59539 299 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 LRRC37A5PQ49AS3 106 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 SLC25A2Q9BXI2 301 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 KRTAP1-5Q9BYS1 174 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 LENEPQ9Y5L5 61 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms