RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 UBE2CO00762 179 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BKO60814 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 CA1P00915 261 aaPredicted RBP5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BJP06899 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 OR5AL1P0C617 328 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HOXA5P20719 270 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BOP23527 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BBP33778 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 CTRLP40313 264 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 CDKN1BP46527 198 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 TFPI2P48307 235 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BDP58876 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BCP62807 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 Q0VG73 95 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST2H2BEQ16778 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.96□□□□□ -1.46
VPS39-213ENST00000570062 MRPL54Q6P161 138 aaKnown RBP5.96□□□□□ -1.46
VPS39-213ENST00000570062 FAM159AQ6UWV7 190 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 C18orf65Q6ZTR6 163 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 TMEM61Q8N0U2 210 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 SPATA3Q8NHX4 192 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 GTSF1Q8WW33 167 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BHQ93079 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 PGLYRP4Q96LB8 373 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BNQ99877 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 HIST1H2BMQ99879 126 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 CNFNQ9BYD5 112 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 GPR61Q9BZJ8 451 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 ZMAT5Q9UDW3 170 aaKnown RBP5.96□□□□□ -1.46
VPS39-213ENST00000570062 COL6A5A8TX70 2615 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 MXRA5Q9NR99 2828 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 IGHV4-4A0A075B6R2 117 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 LOC105371267A0A1B0GV96 52 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 C7orf71A4D174 169 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 A8MTW9 85 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 PHOX2AO14813 284 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 PPBPP02775 128 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 IGLC6P0CF74 106 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 HLA-DRB4P13762 266 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 S100A4P26447 101 aaKnown RBP5.95□□□□□ -1.46
VPS39-213ENST00000570062 S100A2P29034 98 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 ASIPP42127 132 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 NDUFA6P56556 154 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 SNRPEP62304 92 aaKnown RBP5.95□□□□□ -1.46
VPS39-213ENST00000570062 NSUN5P1Q3KNT7 163 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 TDRG1Q3Y452 100 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 CD300EQ496F6 205 aaPredicted RBP5.95□□□□□ -1.46
VPS39-213ENST00000570062 ADAMTSL5Q6ZMM2 481 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 ZNF493Q6ZR52 646 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 Q71RC1 249 aaPredicted RBP5.95□□□□□ -1.46
VPS39-213ENST00000570062 ZFP82Q8N141 532 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 ZFAND2AQ8N6M9 145 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 C11orf44Q8N8P7 122 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 HLA-DRB4X5D2U9 266 aa5.95□□□□□ -1.46
VPS39-213ENST00000570062 JMJD1CQ15652 2540 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 OR11H12B2RN74 326 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 SPINK4O60575 86 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 SAP30O75446 220 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 IGLV1-51P01701 117 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 RNASE4P34096 147 aaKnown RBP5.94□□□□□ -1.46
VPS39-213ENST00000570062 CAMPP49913 170 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 ZNF80P51504 273 aaPredicted RBP5.94□□□□□ -1.46
VPS39-213ENST00000570062 DEFB131AP59861 70 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 C9orf66Q5T8R8 295 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 LYZL1Q6UWQ5 148 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 PACRGQ96M98 296 aaPredicted RBP5.94□□□□□ -1.46
VPS39-213ENST00000570062 DUX3Q96PT4 197 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 CITED1Q99966 193 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 ZNF256Q9Y2P7 627 aaPredicted RBP5.94□□□□□ -1.46
VPS39-213ENST00000570062 LAMTOR2Q9Y2Q5 125 aa5.94□□□□□ -1.46
VPS39-213ENST00000570062 TRGV11A0A075B6L2 103 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 IGKV3D-20A0A0C4DH25 116 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 H3BMM0 161 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 SNAI2O43623 268 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 PPP1R17O96001 155 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 TWIST1Q15672 202 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 SPANXN1Q5VSR9 72 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 BAGE3Q86Y29 109 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 STHQ8IWL8 128 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 TMEM256Q8N2U0 113 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 LINC00482Q8N8I6 264 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 TMEM18Q96B42 140 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 LINC00467Q9BRT7 94 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 NDUFAF3Q9BU61 184 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 TPPP3Q9BW30 176 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 C1QTNF4Q9BXJ3 329 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 TMEM191AQ9H0A3 160 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 MAP6D1Q9H9H5 199 aa5.93□□□□□ -1.46
VPS39-213ENST00000570062 ACANP16112 2415 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 TMSB15BA0A087X1C1 80 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 F6UB75 175 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 ZNF324O75467 553 aaPredicted RBP5.92□□□□□ -1.46
VPS39-213ENST00000570062 ZNF705DP0CH99 300 aaPredicted RBP5.92□□□□□ -1.46
VPS39-213ENST00000570062 ZNF705BP0CI00 300 aaPredicted RBP5.92□□□□□ -1.46
VPS39-213ENST00000570062 ESDP10768 282 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 RAB4AP20338 218 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 PMCHP20382 165 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 NTF3P20783 257 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 EDN2P20800 178 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 PIK3CD-AS1Q5SR53 167 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms