RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ACACBO00763 2458 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 FOXI2Q6ZQN5 318 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 C22orf34Q6ZV56 151 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 DPF1Q92782 380 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 SEM1Q6ZVN7 128 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 ANXA2RQ3ZCQ2 193 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 C2orf66Q6UXQ4 117 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 AGRNO00468 2067 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 CACNA1AO00555 2505 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 MYCNOSP40205 109 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 CRIP1P50238 77 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 MYMXA0A1B0GTQ4 84 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 C9JAW5 83 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 CRYGCP07315 174 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 GAGE2BQ13066 116 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 ODF1Q14990 250 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 LINC01559Q495D7 138 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 GAGE2EQ4V326 116 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 GAGE2DQ9UEU5 116 aa8.94□□□□□ -0.98
CLN3-238ENST00000569430 SPTBN4Q9H254 2564 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 F8VRH5 84 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 CD7P09564 240 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 RRN3P1Q2M238 152 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 ZFAND6Q6FIF0 208 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 TMEM219Q86XT9 240 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 ZNF292O60281 2723 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 FGF6P10767 208 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 NPC2P61916 151 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 CFHR4Q92496 578 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 TRAV21A0A0B4J279 112 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 SUMO2P61956 95 aaKnown RBP8.93□□□□□ -0.98
CLN3-238ENST00000569430 VMO1Q7Z5L0 202 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 RNF5Q99942 180 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 PRO3102Q9H379 93 aa8.93□□□□□ -0.98
CLN3-238ENST00000569430 PRAC2D3DTV9 90 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 KLHL30-AS1Q8NEE0 82 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 A0A087WWL8 130 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 TEX22C9J3V5 150 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 G3V318 75 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 ZNF80P51504 273 aaPredicted RBP8.92□□□□□ -0.98
CLN3-238ENST00000569430 A0A0U1RRA0 63 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 FOXE3Q13461 319 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 PTH2Q96A98 100 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 MRAP2Q96G30 205 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 SPAG8Q99932 426 aaPredicted RBP8.92□□□□□ -0.98
CLN3-238ENST00000569430 AGPAT4-IT1Q9H0P7 198 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 C7orf69Q9H7B7 122 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 ERG28Q9UKR5 140 aa8.92□□□□□ -0.98
CLN3-238ENST00000569430 A0A087WX48 190 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 C20orf78Q9BR46 151 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 IGKV3D-20A0A0C4DH25 116 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 INS-IGF2F8WCM5 200 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 DPH3P1Q9H4G8 78 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 CEACAM4O75871 244 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 SMIM2Q9BVW6 85 aa8.91□□□□□ -0.98
CLN3-238ENST00000569430 TRAV26-1A0A087WT03 109 aa8.9□□□□□ -0.98
CLN3-238ENST00000569430 PPP1R17O96001 155 aa8.9□□□□□ -0.98
CLN3-238ENST00000569430 Q6ZS92 163 aa8.9□□□□□ -0.98
CLN3-238ENST00000569430 TMEM262E9PQX1 116 aa8.9□□□□□ -0.98
CLN3-238ENST00000569430 IGLV2-11P01706 119 aa8.9□□□□□ -0.98
CLN3-238ENST00000569430 GAS8-AS1O95177 125 aa8.9□□□□□ -0.99
CLN3-238ENST00000569430 ID1P41134 155 aa8.9□□□□□ -0.99
CLN3-238ENST00000569430 PAX8Q06710 450 aa8.9□□□□□ -0.99
CLN3-238ENST00000569430 VCX2Q9H322 139 aa8.9□□□□□ -0.99
CLN3-238ENST00000569430 SETD2Q9BYW2 2564 aaPredicted RBP8.9□□□□□ -0.99
CLN3-238ENST00000569430 TRAV12-3A0A0B4J271 114 aa8.89□□□□□ -0.99
CLN3-238ENST00000569430 PAPPA-AS1Q5QFB9 102 aa8.89□□□□□ -0.99
CLN3-238ENST00000569430 PRSS29PA6NIE9 313 aa8.89□□□□□ -0.99
CLN3-238ENST00000569430 TP53TG1Q9Y2A0 90 aa8.89□□□□□ -0.99
CLN3-238ENST00000569430 ZNF493Q6ZR52 646 aa8.88□□□□□ -0.99
CLN3-238ENST00000569430 PPDPFLQ8WWR9 84 aa8.88□□□□□ -0.99
CLN3-238ENST00000569430 PRR30Q53SZ7 412 aaPredicted RBP8.88□□□□□ -0.99
CLN3-238ENST00000569430 MAPKAPK5-AS1Q8N8E1 139 aa8.88□□□□□ -0.99
CLN3-238ENST00000569430 RPL39LQ96EH5 51 aaKnown RBP8.88□□□□□ -0.99
CLN3-238ENST00000569430 HIGD1BQ9P298 99 aa8.88□□□□□ -0.99
CLN3-238ENST00000569430 C8orf86Q6ZUL3 223 aa8.88□□□□□ -0.99
CLN3-238ENST00000569430 ATP6V0E1O15342 81 aa8.87□□□□□ -0.99
CLN3-238ENST00000569430 TAL2Q16559 108 aa8.87□□□□□ -0.99
CLN3-238ENST00000569430 IGLV1-47P01700 117 aa8.87□□□□□ -0.99
CLN3-238ENST00000569430 DEFB1P60022 68 aa8.87□□□□□ -0.99
CLN3-238ENST00000569430 KAAG1Q9UBP8 84 aa8.87□□□□□ -0.99
CLN3-238ENST00000569430 TRBV20-1A0A075B6N2 111 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 CTSGP08311 255 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 TMEM95Q3KNT9 176 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 UFSP1Q6NVU6 142 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 TMEM190Q8WZ59 177 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 LINC00574Q9H8X3 128 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 IGHV3-73A0A0B4J1V6 119 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 B5MCH6 92 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 TSPAN13O95857 204 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 INSL3P51460 131 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 TRAV8-4A0A0B4J246 113 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 F6UB75 175 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 SPXQ9BT56 116 aa8.86□□□□□ -0.99
CLN3-238ENST00000569430 SPANXB1Q9NS25 103 aaPredicted RBP8.86□□□□□ -0.99
CLN3-238ENST00000569430 FCN3O75636 299 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 CRYBA4P53673 196 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 OR11H6Q8NGC7 330 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 SS18L2Q9UHA2 77 aa8.85□□□□□ -0.99
CLN3-238ENST00000569430 PTPRBP23467 1997 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms