RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301	SSNA1	O43805	119 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	SIX6	O95475	246 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	TAS2R45	P59539	299 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	KHDC3L	Q587J8	217 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	ARL6IP6	Q8N6S5	226 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	ASB13	Q8WXK3	278 aa		10.12	□□□□□ -0.79
COMMD4-223	ENST00000568301	IGHV3-16	A0A0C4DH30	117 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	IGHV3-38	A0A0C4DH36	116 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	FAM229A	H3BQW9	127 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	GNRH2	O43555	120 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	LRRC37A5P	Q49AS3	106 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	FFAR4	Q5NUL3	377 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	NTN5	Q8WTR8	489 aa	Predicted RBP	10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	ATP5S	Q99766	215 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	OTOR	Q9NRC9	128 aa		10.11	□□□□□ -0.79
COMMD4-223	ENST00000568301	TRAV21	A0A0B4J279	112 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	LRCOL1	A6NCL2	159 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	PGP	A6NDG6	321 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	LINC01556	Q5JQF7	62 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	FAM74A1	Q5RGS3	127 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	CMTM2	Q8TAZ6	248 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	HYLS1	Q96M11	299 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	TMEM70	Q9BUB7	260 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	MED28	Q9H204	178 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	NAGK	Q9UJ70	344 aa		10.1	□□□□□ -0.79
COMMD4-223	ENST00000568301	IGLV5-52	A0A0A0MRZ9	124 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	LOC100131303	A0A0U1RQF7	123 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	IBA57-AS1	B1ANH7	110 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	PSCA	O43653	123 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	PFN1	P07737	140 aa	Known RBP	10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	GATA1	P15976	413 aa	Predicted RBP	10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	NHLRC2	Q8NBF2	726 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	SCGB1C1	Q8TD33	95 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	KCNS1	Q96KK3	526 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301	MBD2	Q9UBB5	411 aa		10.09	□□□□□ -0.79
COMMD4-223	ENST00000568301		J3QL48	77 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	CIDEA	O60543	219 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	H2BFS	P57053	126 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301		Q6ZSN1	163 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	PPP1R1C	Q8WVI7	109 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	SDF2L1	Q9HCN8	221 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	TREM1	Q9NP99	234 aa		10.08	□□□□□ -0.8
COMMD4-223	ENST00000568301	TRAV8-6	A0A0B4J262	113 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	FBLL1	A6NHQ2	334 aa	Known RBP	10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	TYMS	P04818	313 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	PPT1	P50897	306 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	PQLC2	Q6ZP29	291 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	GOLT1A	Q6ZVE7	132 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	TVP23C	Q96ET8	276 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	HSPB11	Q9Y547	144 aa		10.07	□□□□□ -0.8
COMMD4-223	ENST00000568301	TRBV6-4	A0A1B0GX49	114 aa		10.06	□□□□□ -0.8
COMMD4-223	ENST00000568301		Q6ZNX1	250 aa		10.06	□□□□□ -0.8
COMMD4-223	ENST00000568301		Q8N814	137 aa		10.06	□□□□□ -0.8
COMMD4-223	ENST00000568301	SLC25A29	Q8N8R3	303 aa		10.06	□□□□□ -0.8
COMMD4-223	ENST00000568301		A0A1W2PPV4	95 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	MPC2	O95563	127 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	C1QB	P02746	253 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	PET100	P0DJ07	73 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	RPL12	P30050	165 aa	Known RBP	10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	ACOT6	Q3I5F7	207 aa	Predicted RBP	10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	ZNF876P	Q49A33	203 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	PRADC1	Q9BSG0	188 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	RPH3AL	Q9UNE2	315 aa		10.05	□□□□□ -0.8
COMMD4-223	ENST00000568301	TRAV8-1	A0A0A6YYK1	113 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301		F6UZH7	168 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	RS1	O15537	224 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	RHOH	Q15669	191 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	OR10J3	Q5JRS4	329 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	LELP1	Q5T871	98 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	CFAP126	Q5VTH2	177 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	SMIM3	Q9BZL3	60 aa		10.04	□□□□□ -0.8
COMMD4-223	ENST00000568301	SERTM2	A0A1B0GWG4	89 aa		10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	EIF3G	O75821	320 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	GIP	P09681	153 aa	Predicted RBP	10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	LAGE3	Q14657	143 aa		10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	PTH2	Q96A98	100 aa		10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	NDFIP1	Q9BT67	221 aa		10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301		Q9HAA7	133 aa		10.03	□□□□□ -0.8
COMMD4-223	ENST00000568301	UBR4	Q5T4S7	5183 aa		10.02	□□□□□ -0.8
COMMD4-223	ENST00000568301	TAAR5	O14804	337 aa		10.02	□□□□□ -0.81
COMMD4-223	ENST00000568301	TM2D2	Q9BX73	214 aa		10.02	□□□□□ -0.81
COMMD4-223	ENST00000568301	GTSF1L	Q9H1H1	148 aa		10.02	□□□□□ -0.81
COMMD4-223	ENST00000568301	FAM30A	Q9NZY2	134 aa		10.02	□□□□□ -0.81
COMMD4-223	ENST00000568301	LRP1	Q07954	4544 aa	Known RBP	10.02	□□□□□ -0.81
COMMD4-223	ENST00000568301	IGHV3-30	P01768	117 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	IGHV3-33	P01772	117 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	IGHV3-30-3	P0DP02	117 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	IGHV3-30-5	P0DP03	117 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	MGST1	P10620	155 aa	Known RBP	10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	RAB2A	P61019	212 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	GNG5	P63218	68 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	DPPA3	Q6W0C5	159 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	OR10G9	Q8NGN4	311 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	OR10G7	Q8NGN6	311 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	ATP6V0E2	Q8NHE4	81 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	C9orf85	Q96MD7	179 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	SH3BGRL3	Q9H299	93 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	WFDC1	Q9HC57	220 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	C11orf21	Q9P2W6	132 aa		10.01	□□□□□ -0.81
COMMD4-223	ENST00000568301	HMCN2	Q8NDA2	5059 aa		10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms