RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 TRAV40A0A0B4J280 105 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 A6NDX4 124 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 H3BUA1 57 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 MRPS12O15235 138 aaKnown RBP4.5□□□□□ -1.69
VPS39-209ENST00000568029 SPINK4O60575 86 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 BRI3O95415 125 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 IGHV3-23P01764 117 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 AMBPP02760 352 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 GPR183P32249 361 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 TCL1AP56279 114 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 Q0VG73 95 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 PSG3Q16557 428 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 C9orf152Q5JTZ5 239 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 SAPCD1Q5SSQ6 148 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 C1orf194Q5T5A4 169 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 FAM162BQ5T6X4 162 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 MRPL54Q6P161 138 aaKnown RBP4.5□□□□□ -1.69
VPS39-209ENST00000568029 TOMM20LQ6UXN7 152 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 SIGLEC15Q6ZMC9 328 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 TMEM136Q6ZRR5 245 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 BAGE3Q86Y29 109 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 GBGT1Q8N5D6 347 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 NUP35Q8NFH5 326 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 USMG5Q96IX5 58 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 GFRA4Q9GZZ7 299 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 GNB4Q9HAV0 340 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 PSG8Q9UQ74 426 aa4.5□□□□□ -1.69
VPS39-209ENST00000568029 TNCP24821 2201 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 DNAH7Q8WXX0 4024 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 IGHV4OR15-8A0A075B7B6 117 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 C19orf71A6NCJ1 209 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 HIGD1CA8MV81 97 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 G3V318 75 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 G3V4G9 280 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 IGHG2P01859 326 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 TRGV3P03979 118 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 IGF1P05019 195 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 CT45A10P0DMU9 189 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 IGHV4-38-2P0DP08 117 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 TPPP2P59282 170 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 KRTAP10-3P60369 221 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 KRTAP10-11P60412 298 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 JOSD1Q15040 202 aaPredicted RBP4.49□□□□□ -1.69
VPS39-209ENST00000568029 PYY3Q5JQD4 70 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 OR10J3Q5JRS4 329 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 CLEC19AQ6UXS0 136 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 BRD3OSQ6XYD6 125 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 RBPMS2Q6ZRY4 209 aaKnown RBP4.49□□□□□ -1.69
VPS39-209ENST00000568029 Q86TA4 180 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 PIFOQ8TCI5 191 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 ZNF418Q8TF45 676 aaPredicted RBP4.49□□□□□ -1.69
VPS39-209ENST00000568029 SGK494Q96LW2 274 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 C17orf77Q96MU5 243 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 MS4A10Q96PG2 267 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 METTL26Q96S19 204 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 GSN-AS1Q9NRJ2 163 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 CLEC5AQ9NY25 188 aa4.49□□□□□ -1.69
VPS39-209ENST00000568029 A0A087X0K7 114 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 A0A0G2JLM5 398 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 A0A1B0GW15 77 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 A0A1W2PS18 150 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 H3BUX3 64 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 IGLV2-11P01706 119 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 ESDP10768 282 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 BMI1P35226 326 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 RPS20P60866 119 aaKnown RBP4.48□□□□□ -1.69
VPS39-209ENST00000568029 HBBP68871 147 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 SLC35B1P78383 322 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 GAGE5Q13069 117 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 GAGE6Q13070 117 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 RIGQ13278 110 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 UBE2V1Q13404 147 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 LY6EQ16553 131 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 OR2D3Q8NGH3 330 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 BORCS7Q96B45 105 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 SLC50A1Q9BRV3 221 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 NDFIP1Q9BT67 221 aa4.48□□□□□ -1.69
VPS39-209ENST00000568029 STARD9Q9P2P6 4700 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 IGKV2D-30A0A075B6S6 120 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 TRAV8-1A0A0A6YYK1 113 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 GRIFINA4D1Z8 144 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 RBAKDNA6NC62 111 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 A8MWP6 167 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 CHEK1O14757 476 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 BUB3O43684 328 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 CA1P00915 261 aaPredicted RBP4.47□□□□□ -1.69
VPS39-209ENST00000568029 FOXA3P55318 350 aaPredicted RBP4.47□□□□□ -1.69
VPS39-209ENST00000568029 IQCJQ1A5X6 159 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 Q6AWC8 147 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 LCN12Q6JVE5 192 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 TCF24Q7RTU0 167 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 TMEM256Q8N2U0 113 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 SIGLECL1Q8N7X8 197 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 PGLYRP4Q96LB8 373 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 C1QTNF4Q9BXJ3 329 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 SAMD10Q9BYL1 202 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 ZNF580Q9UK33 172 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 SMAD5-AS1Q9Y6J3 95 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 TENM2Q9NT68 2774 aa4.47□□□□□ -1.69
VPS39-209ENST00000568029 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms