RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 CAV2P51636 162 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 ZNF876PQ49A33 203 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 ATRAIDQ6UW56 229 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 TOMM5Q8N4H5 51 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 DNAJC30Q96LL9 226 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 SLC25A2Q9BXI2 301 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 KRTAP9-2Q9BYQ4 174 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 C20orf85Q9H1P6 137 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 DPH3P1Q9H4G8 78 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 SDF2L1Q9HCN8 221 aa10.8□□□□□ -0.68
CDH3-205ENST00000566808 IGHV3-73A0A0B4J1V6 119 aa10.79□□□□□ -0.68
CDH3-205ENST00000566808 UBE2L5PA0A1B0GUS4 154 aa10.79□□□□□ -0.68
CDH3-205ENST00000566808 BAXQ07812 192 aa10.79□□□□□ -0.68
CDH3-205ENST00000566808 DEDD2Q8WXF8 326 aa10.79□□□□□ -0.68
CDH3-205ENST00000566808 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.79□□□□□ -0.68
CDH3-205ENST00000566808 INPP1P49441 399 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 NIT1Q86X76 327 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 OR10G9Q8NGN4 311 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 CHAC2Q8WUX2 184 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 TMED6Q8WW62 240 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 PHYHIPLQ96FC7 376 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 FAM167A-AS1Q96KT0 104 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 KLK12Q9UKR0 248 aa10.78□□□□□ -0.68
CDH3-205ENST00000566808 TRAV21A0A0B4J279 112 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 L7N2F9 121 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 CST7O76096 145 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 MBPP02686 304 aaPredicted RBP10.77□□□□□ -0.69
CDH3-205ENST00000566808 VAMP2P63027 116 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 DPPA3Q6W0C5 159 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 CYB561D1Q8N8Q1 229 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 UBE2WQ96B02 151 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 KCNS1Q96KK3 526 aa10.77□□□□□ -0.69
CDH3-205ENST00000566808 DIRC3C9JPN6 131 aa10.76□□□□□ -0.69
CDH3-205ENST00000566808 SPCS2Q15005 226 aa10.76□□□□□ -0.69
CDH3-205ENST00000566808 ASB13Q8WXK3 278 aa10.76□□□□□ -0.69
CDH3-205ENST00000566808 GSKIPQ9P0R6 139 aa10.76□□□□□ -0.69
CDH3-205ENST00000566808 GAGE12JA6NER3 117 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 GAGE1Q13065 139 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 GAGE4Q13068 117 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 GAGE5Q13069 117 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 ELOBQ15370 118 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 GAGE13Q4V321 117 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 GCSAMLQ5JQS6 135 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 C9orf163Q8N9P6 203 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 FXYD5Q96DB9 178 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 ZC2HC1AQ96GY0 325 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 LINC01600Q96MT4 127 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 CHCHD7Q9BUK0 85 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 C1orf43Q9BWL3 253 aa10.75□□□□□ -0.69
CDH3-205ENST00000566808 PANO1I0J062 215 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 FGF7P21781 194 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 BCAP31P51572 246 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 Q0VG73 95 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 DGAT2L7PQ6IED9 249 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 MIR17HGQ75NE6 70 aa10.74□□□□□ -0.69
CDH3-205ENST00000566808 A0A087WX48 190 aa10.73□□□□□ -0.69
CDH3-205ENST00000566808 ODF1Q14990 250 aa10.73□□□□□ -0.69
CDH3-205ENST00000566808 ZNF506Q5JVG8 444 aa10.73□□□□□ -0.69
CDH3-205ENST00000566808 USP17L23D6RBM5 183 aa10.72□□□□□ -0.69
CDH3-205ENST00000566808 RANP62826 216 aaKnown RBP10.72□□□□□ -0.69
CDH3-205ENST00000566808 PTH2Q96A98 100 aa10.72□□□□□ -0.69
CDH3-205ENST00000566808 F6UZH7 168 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 S100A11P31949 105 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 HBG1P69891 147 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 HBG2P69892 147 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 CIRBPQ14011 172 aaKnown RBP10.71□□□□□ -0.69
CDH3-205ENST00000566808 PYDC2Q56P42 97 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 KCNIP4Q6PIL6 250 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 ZFP2Q6ZN57 461 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 C9orf85Q96MD7 179 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 NPCDR1Q9BY65 106 aa10.71□□□□□ -0.69
CDH3-205ENST00000566808 LSM5Q9Y4Y9 91 aaKnown RBP10.71□□□□□ -0.69
CDH3-205ENST00000566808 SULT1A1P50225 295 aa10.7□□□□□ -0.7
CDH3-205ENST00000566808 FGF8P55075 233 aaPredicted RBP10.7□□□□□ -0.7
CDH3-205ENST00000566808 RPL19P84098 196 aaKnown RBP10.7□□□□□ -0.7
CDH3-205ENST00000566808 STX12Q86Y82 276 aa10.7□□□□□ -0.7
CDH3-205ENST00000566808 PARLQ9H300 379 aa10.7□□□□□ -0.7
CDH3-205ENST00000566808 FAM24AA6NFZ4 105 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 OR7C2O60412 319 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 NDUFB6O95139 128 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 PRSS1P07477 247 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 UBE2L3P68036 154 aaKnown RBP10.69□□□□□ -0.7
CDH3-205ENST00000566808 DMRTA1Q5VZB9 504 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 SDIM1Q6ZPB5 146 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 C11orf1Q9H5F2 150 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 TREM1Q9NP99 234 aa10.69□□□□□ -0.7
CDH3-205ENST00000566808 A0A0J9YXV3 536 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 PGPA6NDG6 321 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 PGPEP1LA6NFU8 196 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 HLA-DQA1P01909 254 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 CRPP02741 224 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 SMIM18P0DKX4 95 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 SPANXN2Q5MJ10 180 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 MITD1Q8WV92 249 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 RNF185Q96GF1 192 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 LINC00479Q96M42 142 aa10.68□□□□□ -0.7
CDH3-205ENST00000566808 SLIRPQ9GZT3 109 aaKnown RBP10.68□□□□□ -0.7
CDH3-205ENST00000566808 LYRM2Q9NU23 88 aaPredicted RBP10.68□□□□□ -0.7
CDH3-205ENST00000566808 A8MWV9 139 aa10.67□□□□□ -0.7
CDH3-205ENST00000566808 PVALBP20472 110 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms