RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZNF80P51504 273 aaPredicted RBP10.24□□□□□ -0.77
VPS4A-204ENST00000566354 OR4X2Q8NGF9 303 aa10.24□□□□□ -0.77
VPS4A-204ENST00000566354 VGLL1Q99990 258 aa10.24□□□□□ -0.77
VPS4A-204ENST00000566354 A0A1W2PRD5 423 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 A0A1W2PRF3 423 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 A0A1W2PRM7 423 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 NCBP2LA6PVI3 153 aaKnown RBP10.23□□□□□ -0.77
VPS4A-204ENST00000566354 FXYD7P58549 80 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 KLRD1Q13241 179 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 PSMG4Q5JS54 123 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 Q8TAT8 98 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 AP1S3Q96PC3 154 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 CNFNQ9BYD5 112 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 SMAD5-AS1Q9Y6J3 95 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 CREBBPQ92793 2442 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.23□□□□□ -0.772e-7■□□□□ 9.5
VPS4A-204ENST00000566354 C9orf118A6NHY6 69 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 SMKR1H3BMG3 65 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 NDPQ00604 133 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 ZNF575Q86XF7 245 aa10.23□□□□□ -0.77
VPS4A-204ENST00000566354 BEX4Q9NWD9 120 aaPredicted RBP10.23□□□□□ -0.77
VPS4A-204ENST00000566354 PRRC2AP48634 2157 aaKnown RBP10.23□□□□□ -0.77
VPS4A-204ENST00000566354 LINC01546A6NGU7 62 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 FABP5P3A8MUU1 101 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 IGHV3-23P01764 117 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 DSCR9P59020 149 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 MAP1LC3AQ9H492 121 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 SS18L2Q9UHA2 77 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 OOSP1A8MZH6 123 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 ORM1P02763 201 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 ADAMTSL5Q6ZMM2 481 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 Q8N6K4 173 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 PIFOQ8TCI5 191 aa10.22□□□□□ -0.77
VPS4A-204ENST00000566354 VMO1Q7Z5L0 202 aa10.21□□□□□ -0.77
VPS4A-204ENST00000566354 RNF185Q96GF1 192 aa10.21□□□□□ -0.77
VPS4A-204ENST00000566354 ITPR3Q14573 2671 aa10.21□□□□□ -0.78
VPS4A-204ENST00000566354 EBI3Q14213 229 aa10.21□□□□□ -0.78
VPS4A-204ENST00000566354 MAPK1IP1LQ8NDC0 245 aa10.21□□□□□ -0.78
VPS4A-204ENST00000566354 SIRPDQ9H106 197 aa10.21□□□□□ -0.78
VPS4A-204ENST00000566354 NXT2Q9NPJ8 142 aaKnown RBP10.21□□□□□ -0.78
VPS4A-204ENST00000566354 MSRB1Q9NZV6 116 aa10.21□□□□□ -0.78
VPS4A-204ENST00000566354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.2□□□□□ -0.78
VPS4A-204ENST00000566354 SLC25A16P16260 332 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 HLA-DMBP28068 263 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 NMUP48645 174 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 IGFL4Q6B9Z1 124 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 DKK2Q9UBU2 259 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 ZNF469Q96JG9 3925 aaPredicted RBP10.2□□□□□ -0.78
VPS4A-204ENST00000566354 NOTCH2Q04721 2471 aa10.2□□□□□ -0.78
VPS4A-204ENST00000566354 A0A096LNT2 108 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 FCER1GP30273 86 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 KIR3DS1Q14943 382 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 LINC01559Q495D7 138 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 LRRC75A-AS1Q8N1F1 130 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 DYNAPQ8N1N2 210 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 UFC1Q9Y3C8 167 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 A0A0G2JLM5 398 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 RBAKDNA6NC62 111 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 LEPP41159 167 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 MINOS1Q5TGZ0 78 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 PCP2Q8IVA1 136 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 MINOS1-NBL1R4GNA1 71 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 CSPG4Q6UVK1 2322 aa10.19□□□□□ -0.78
VPS4A-204ENST00000566354 IGHV7-81A0A0B4J1V7 117 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 RNF223E7ERA6 249 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 H3BUT2 72 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 TNFRSF6BO95407 300 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 TCTAP57738 103 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 KRTAP1-3Q8IUG1 177 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 PTH2Q96A98 100 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 ZMAT4Q9H898 229 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 CR1P17927 2039 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 TEX15Q9BXT5 2789 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 TGFAP01135 160 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 RPL24P83731 157 aaKnown RBP10.18□□□□□ -0.78
VPS4A-204ENST00000566354 C18orf15Q96N68 181 aa10.18□□□□□ -0.78
VPS4A-204ENST00000566354 ID1P41134 155 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 WFDC3Q8IUB2 231 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 OR2K2Q8NGT1 345 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 TLN2Q9Y4G6 2542 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 BUB3O43684 328 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 MSMBP08118 114 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 ERCC8Q13216 396 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 ZNF502Q8TBZ5 544 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 Q96MF0 132 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 JMJD8Q96S16 334 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 SLC50A1Q9BRV3 221 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 HHLA3Q9XRX5 114 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 TSSC4Q9Y5U2 329 aaPredicted RBP10.17□□□□□ -0.78
VPS4A-204ENST00000566354 FLNAP21333 2647 aaKnown RBP10.17□□□□□ -0.78
VPS4A-204ENST00000566354 ZFHX3Q15911 3703 aa10.17□□□□□ -0.78
VPS4A-204ENST00000566354 IGHV3OR16-8A0A075B7F1 116 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 PRSS1P07477 247 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 HIGD1BQ9P298 99 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 CYSLTR1Q9Y271 337 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 IGHV3-35A0A0C4DH35 117 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 PRAC2D3DTV9 90 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 GAS8-AS1O95177 125 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 KLK9Q2XQG4 91 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 C15orf32Q32M92 178 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms