RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 IGHV3-16A0A0C4DH30 117 aa14.27□□□□□ -0.13
CLN3-219ENST00000565778 KRTAP1-5Q9BYS1 174 aa14.27□□□□□ -0.13
CLN3-219ENST00000565778 PSG8Q9UQ74 426 aa14.27□□□□□ -0.13
CLN3-219ENST00000565778 PKD1P98161 4303 aa14.27□□□□□ -0.13
CLN3-219ENST00000565778 MUC4Q99102 2169 aa14.26□□□□□ -0.13
CLN3-219ENST00000565778 A0A1W2PPQ1 181 aa14.26□□□□□ -0.13
CLN3-219ENST00000565778 M0R2P5 195 aa14.26□□□□□ -0.13
CLN3-219ENST00000565778 OR4C5Q8NGB2 326 aa14.26□□□□□ -0.13
CLN3-219ENST00000565778 SIVA1O15304 175 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 TYMSP04818 313 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 LYPD5Q6UWN5 251 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 NEGR1Q7Z3B1 354 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 PRNTQ86SH4 94 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 ZNF575Q86XF7 245 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 PKHD1P08F94 4074 aa14.25□□□□□ -0.13
CLN3-219ENST00000565778 GGTLC3B5MD39 225 aa14.24□□□□□ -0.13
CLN3-219ENST00000565778 TAAR5O14804 337 aa14.24□□□□□ -0.13
CLN3-219ENST00000565778 FLI1Q01543 452 aaPredicted RBP14.24□□□□□ -0.13
CLN3-219ENST00000565778 PCNPQ8WW12 178 aaKnown RBP14.24□□□□□ -0.13
CLN3-219ENST00000565778 HERC2O95714 4834 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 TRAV4A0A0B4J268 109 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 NXPH4O95158 308 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 GCGP01275 180 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 ZNF80P51504 273 aaPredicted RBP14.23□□□□□ -0.13
CLN3-219ENST00000565778 SMUG1Q53HV7 270 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 AKR1C8PQ5T2L2 129 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 CYB561D1Q8N8Q1 229 aa14.23□□□□□ -0.13
CLN3-219ENST00000565778 CTXND1A0A1B0GTU2 59 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 A0A1W2PRE2 83 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 K7EQD1 137 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 ARPC5O15511 151 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 IFNA7P01567 189 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 IGLV2-11P01706 119 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 ORM1P02763 201 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 GYPEP15421 78 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 SRIP30626 198 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 ZNF726P1Q15940 193 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 ZFP69Q49AA0 526 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 SAPCD1Q5SSQ6 148 aa14.22□□□□□ -0.13
CLN3-219ENST00000565778 KIAA1109Q2LD37 5005 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 FBLL1A6NHQ2 334 aaKnown RBP14.21□□□□□ -0.13
CLN3-219ENST00000565778 C16orf90A8MZG2 172 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 C9JCJ5 164 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 UBE2G2P60604 165 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 TMEM75Q8N9X5 138 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 LINC00479Q96M42 142 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 C11orf21Q9P2W6 132 aa14.21□□□□□ -0.13
CLN3-219ENST00000565778 G3V3Q6 166 aa14.2□□□□□ -0.14
CLN3-219ENST00000565778 PFN1P07737 140 aaKnown RBP14.2□□□□□ -0.14
CLN3-219ENST00000565778 BTF3P20290 206 aaKnown RBP14.2□□□□□ -0.14
CLN3-219ENST00000565778 FGF8P55075 233 aaPredicted RBP14.2□□□□□ -0.14
CLN3-219ENST00000565778 ZNF876PQ49A33 203 aa14.2□□□□□ -0.14
CLN3-219ENST00000565778 TRAV34A0A0B4J273 112 aa14.19□□□□□ -0.14
CLN3-219ENST00000565778 TXNDC17Q9BRA2 123 aa14.19□□□□□ -0.14
CLN3-219ENST00000565778 SMLR1H3BR10 107 aa14.18□□□□□ -0.14
CLN3-219ENST00000565778 PPT1P50897 306 aa14.18□□□□□ -0.14
CLN3-219ENST00000565778 LINC00315P59091 139 aa14.18□□□□□ -0.14
CLN3-219ENST00000565778 CYTL1Q9NRR1 136 aa14.18□□□□□ -0.14
CLN3-219ENST00000565778 TRAV9-2A0A087WT02 112 aa14.17□□□□□ -0.14
CLN3-219ENST00000565778 KRTAP17-1Q9BYP8 105 aa14.17□□□□□ -0.14
CLN3-219ENST00000565778 NKX6-2Q9C056 277 aaPredicted RBP14.17□□□□□ -0.14
CLN3-219ENST00000565778 LOC100131303A0A0U1RQF7 123 aa14.16□□□□□ -0.14
CLN3-219ENST00000565778 SPATA12Q7Z6I5 190 aa14.16□□□□□ -0.14
CLN3-219ENST00000565778 DYNC1H1Q14204 4646 aaKnown RBP14.15□□□□□ -0.14
CLN3-219ENST00000565778 FAM74A7A6NL05 159 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 FABP5P3A8MUU1 101 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 PEX7O00628 323 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 GATA1P15976 413 aaPredicted RBP14.15□□□□□ -0.14
CLN3-219ENST00000565778 NHLRC2Q8NBF2 726 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 LY96Q9Y6Y9 160 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 ARL2-SNX15V9GYD0 113 aa14.15□□□□□ -0.14
CLN3-219ENST00000565778 MAP1LC3B2A6NCE7 125 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 PGPEP1LA6NFU8 196 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 RS1O15537 224 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 CIDEAO60543 219 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 S100A4P26447 101 aaKnown RBP14.14□□□□□ -0.15
CLN3-219ENST00000565778 CFAP126Q5VTH2 177 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 SH2D6Q7Z4S9 175 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 STOML3Q8TAV4 291 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 HIST1H2BAQ96A08 127 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 C9orf85Q96MD7 179 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 MAP1LC3BQ9GZQ8 125 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 TNFRSF18Q9Y5U5 241 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 DNAH11Q96DT5 4516 aa14.14□□□□□ -0.15
CLN3-219ENST00000565778 IGHV3-73A0A0B4J1V6 119 aa14.13□□□□□ -0.15
CLN3-219ENST00000565778 DPPA3Q6W0C5 159 aa14.13□□□□□ -0.15
CLN3-219ENST00000565778 RNASE3P12724 160 aaKnown RBP14.12□□□□□ -0.15
CLN3-219ENST00000565778 EVI2AP22794 236 aa14.12□□□□□ -0.15
CLN3-219ENST00000565778 WFDC10BQ8IUB3 73 aa14.12□□□□□ -0.15
CLN3-219ENST00000565778 KCNRGQ8N5I3 272 aa14.12□□□□□ -0.15
CLN3-219ENST00000565778 SLC25A29Q8N8R3 303 aa14.12□□□□□ -0.15
CLN3-219ENST00000565778 PRADC1Q9BSG0 188 aa14.12□□□□□ -0.15
CLN3-219ENST00000565778 IGKV3D-20A0A0C4DH25 116 aa14.11□□□□□ -0.15
CLN3-219ENST00000565778 ZNF506Q5JVG8 444 aa14.11□□□□□ -0.15
CLN3-219ENST00000565778 CST9LP1Q5W188 147 aa14.11□□□□□ -0.15
CLN3-219ENST00000565778 PTH2Q96A98 100 aa14.11□□□□□ -0.15
CLN3-219ENST00000565778 FHITP49789 147 aa14.1□□□□□ -0.15
CLN3-219ENST00000565778 Q6ZRN7 208 aaPredicted RBP14.1□□□□□ -0.15
CLN3-219ENST00000565778 Q86TA4 180 aa14.1□□□□□ -0.15
CLN3-219ENST00000565778 NFE4Q86UQ8 179 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms