RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 USP9YO00507 2555 aaPredicted RBP10.33□□□□□ -0.76
CLK3-215ENST00000564353 IGHV4-61A0A0C4DH41 118 aa10.33□□□□□ -0.76
CLK3-215ENST00000564353 FBLL1A6NHQ2 334 aaKnown RBP10.33□□□□□ -0.76
CLK3-215ENST00000564353 SCGB1A1P11684 91 aa10.33□□□□□ -0.76
CLK3-215ENST00000564353 GATA3P23771 443 aa10.33□□□□□ -0.76
CLK3-215ENST00000564353 ATP5G2Q06055 141 aa10.33□□□□□ -0.76
CLK3-215ENST00000564353 ITLN2Q8WWU7 325 aaPredicted RBP10.33□□□□□ -0.76
CLK3-215ENST00000564353 GEMIN7Q9H840 131 aaKnown RBP10.33□□□□□ -0.76
CLK3-215ENST00000564353 C7orf71A4D174 169 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 OOSP1A8MZH6 123 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 BLCAPP62952 87 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 RPL24P83731 157 aaKnown RBP10.32□□□□□ -0.76
CLK3-215ENST00000564353 GATD1Q8NB37 220 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 MAP1LC3AQ9H492 121 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 M0R381 172 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 PRORYQ9H606 182 aa10.32□□□□□ -0.76
CLK3-215ENST00000564353 USP9XQ93008 2570 aaPredicted RBP10.32□□□□□ -0.76
CLK3-215ENST00000564353 MYO18BQ8IUG5 2567 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 TRAV41A0A0B4J266 112 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 HIST1H1AQ02539 215 aaPredicted RBP10.31□□□□□ -0.76
CLK3-215ENST00000564353 SPANXN1Q5VSR9 72 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 TMEM158Q8WZ71 300 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 IGKV2D-26A0A0A0MRZ7 120 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 PAX8Q06710 450 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 C12orf54Q6X4T0 127 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 DEFB125Q8N687 156 aa10.31□□□□□ -0.76
CLK3-215ENST00000564353 FGF6P10767 208 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 ARL3P36405 182 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 BOD1L2Q8IYS8 172 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 MS4A6AQ9H2W1 248 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 GTSCR1Q86UQ5 136 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 FOXC2Q99958 501 aa10.3□□□□□ -0.76
CLK3-215ENST00000564353 TMEM97Q5BJF2 176 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 GTF2H5Q6ZYL4 71 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 PIFOQ8TCI5 191 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 H3BUX3 64 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 PF4V1P10720 104 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 MAPK1IP1LQ8NDC0 245 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 PSMG3-AS1Q96PY0 264 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 CITED1Q99966 193 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 TMEM160Q9NX00 188 aa10.29□□□□□ -0.76
CLK3-215ENST00000564353 PEF1Q9UBV8 284 aaKnown RBP10.29□□□□□ -0.76
CLK3-215ENST00000564353 CREBBPQ92793 2442 aa10.28□□□□□ -0.76
CLK3-215ENST00000564353 IGHV7-4-1A0A0J9YVY3 117 aa10.28□□□□□ -0.76
CLK3-215ENST00000564353 LINC01559Q495D7 138 aa10.28□□□□□ -0.76
CLK3-215ENST00000564353 TSSC4Q9Y5U2 329 aaPredicted RBP10.28□□□□□ -0.76
CLK3-215ENST00000564353 SLC50A1Q9BRV3 221 aa10.28□□□□□ -0.76
CLK3-215ENST00000564353 FAM208BQ5VWN6 2430 aa10.27□□□□□ -0.76
CLK3-215ENST00000564353 HSD52Q0P140 79 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 LGALS9BQ3B8N2 356 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 LGALS9CQ6DKI2 356 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 SORL1Q92673 2214 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 H3BUT2 72 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 NEGR1Q7Z3B1 354 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 COX8CQ7Z4L0 72 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 OR2K2Q8NGT1 345 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 MOB4Q9Y3A3 225 aa10.27□□□□□ -0.77
CLK3-215ENST00000564353 TRBV7-1A0A0A6YYK4 115 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 SIVA1O15304 175 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 RNASE4P34096 147 aaKnown RBP10.26□□□□□ -0.77
CLK3-215ENST00000564353 C10orf99Q6UWK7 81 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 C14orf178Q8N769 122 aaPredicted RBP10.26□□□□□ -0.77
CLK3-215ENST00000564353 IGHV4-30-2A0A087WSY4 118 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 IGHV1-69DA0A0B4J2H0 117 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 TRBV7-9A0A0J9YWB2 115 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 TEX48A0A1B0GUV7 120 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 A1L4Q6 167 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 GNRH2O43555 120 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 IGKV3-20P01619 116 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 IGHV1-69P01742 117 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 ID1P41134 155 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 GPHB5Q86YW7 130 aa10.26□□□□□ -0.77
CLK3-215ENST00000564353 MGPP08493 103 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 SMIM17P0DL12 118 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 S100A4P26447 101 aaKnown RBP10.25□□□□□ -0.77
CLK3-215ENST00000564353 RPL39LQ96EH5 51 aaKnown RBP10.25□□□□□ -0.77
CLK3-215ENST00000564353 JMJD8Q96S16 334 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 TMEM8BA6NDV4 472 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 K7ERJ3 54 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 GCSHP23434 173 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 GAGE12HA6NDE8 117 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 ZC2HC1BQ5TFG8 222 aa10.25□□□□□ -0.77
CLK3-215ENST00000564353 CD5LO43866 347 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 AVPP01185 164 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 FCER1GP30273 86 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 ATP5J2P56134 94 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 UFSP1Q6NVU6 142 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 AP1S3Q96PC3 154 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 CCL19Q99731 98 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 MRPL35Q9NZE8 188 aaKnown RBP10.24□□□□□ -0.77
CLK3-215ENST00000564353 SMIM20Q8N5G0 67 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 MRAP2Q96G30 205 aa10.24□□□□□ -0.77
CLK3-215ENST00000564353 OR4X2Q8NGF9 303 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 CNFNQ9BYD5 112 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 ANXA2RQ3ZCQ2 193 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 HIST2H2BDQ6DRA6 164 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 NRACQ8N912 160 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 FBN2P35556 2912 aa10.23□□□□□ -0.77
CLK3-215ENST00000564353 NPFFR1Q9GZQ6 430 aa10.22□□□□□ -0.77
CLK3-215ENST00000564353 JPT2Q9H910 190 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms