RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FXYD2P54710 66 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 MFAP2P55001 183 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 GFERP55789 205 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 EIF4EBP1Q13541 118 aaPredicted RBP2.47□□□□□ -2.01
VPS35-203ENST00000562420 CST6Q15828 149 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 TMEM155Q4W5P6 130 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 S100A7L2Q5SY68 101 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 MIC13Q5XKP0 118 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 C11orf71Q6IPW1 123 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 SLC48A1Q6P1K1 146 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 UBE2WQ96B02 151 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 FAM19A4Q96LR4 140 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 UBE2E2Q96LR5 201 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 UPK3BQ9BT76 320 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 PSENENQ9NZ42 101 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 PRO1854Q9UHT4 67 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 LINC00527Q9UJ94 153 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 RPUSD1Q9UJJ7 312 aaKnown RBP2.47□□□□□ -2.01
VPS35-203ENST00000562420 HHLA3Q9XRX5 114 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 HILPDAQ9Y5L2 63 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 R4GMQ9 66 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 COL11A1P12107 1806 aaPredicted RBP2.47□□□□□ -2.01
VPS35-203ENST00000562420 SHROOM3Q8TF72 1996 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 KIF26AQ9ULI4 1882 aaPredicted RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 TRBV20OR9-2A0A075B6H5 130 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 IGLV3-16A0A075B6K0 115 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 TRBV7-3A0A075B6L6 115 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 IGHV1OR21-1A0A087WYE8 117 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 TRAV3A0A0B4J244 114 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 A0A0J9YW62 118 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 TRBV27A0A0K0K1C4 114 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 CPSF4LA6NMK7 179 aaKnown RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 F6UB75 175 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 PGLYRP1O75594 196 aaPredicted RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 SCRG1O75711 98 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 EPPINO95925 133 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 TCL1BO95988 128 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 IGLV3-25P01717 112 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 INAFM2P0DMQ5 153 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 MGST1P10620 155 aaKnown RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 SLC25A16P16260 332 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 IFI27P40305 119 aaPredicted RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 NCBP2P52298 156 aaKnown RBP eCLIP2.46□□□□□ -2.02
VPS35-203ENST00000562420 ERCC8Q13216 396 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 RSPO1Q2MKA7 263 aaPredicted RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 ATP5EP2Q5VTU8 51 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 Q6ZQT7 251 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 MED12LQ86YW9 2145 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 C10orf105Q8TEF2 133 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 SRSF12Q8WXF0 261 aaKnown RBP2.46□□□□□ -2.02
VPS35-203ENST00000562420 RMI2Q96E14 147 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 WFDC6Q9BQY6 131 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 C16orf95Q9H693 158 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 ZNF492Q9P255 531 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 SLC25A15Q9Y619 301 aa2.46□□□□□ -2.02
VPS35-203ENST00000562420 IGHV3OR16-12A0A075B7B8 117 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 TRAV12-1A0A0B4J245 112 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 LOC107984156A0A0G2JMH3 177 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 TRBV6-1A0A0K0K1D8 114 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 hADV29S1A0JD25 119 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 C19orf71A6NCJ1 209 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 TCRAP04437 139 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 APOC4P55056 127 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 DAZ2Q13117 558 aaKnown RBP2.45□□□□□ -2.02
VPS35-203ENST00000562420 ZNF56Q15929 161 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 PHF5AQ7RTV0 110 aaKnown RBP2.45□□□□□ -2.02
VPS35-203ENST00000562420 DAZ4Q86SG3 579 aaKnown RBP2.45□□□□□ -2.02
VPS35-203ENST00000562420 ARL17AQ8IVW1 177 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 LINC01561Q8N1V8 128 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 ZNF491Q8N8L2 437 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 UBALD1Q8TB05 177 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 BRK1Q8WUW1 75 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 CYYR1Q96J86 154 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 TM2D3Q9BRN9 247 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 NPCDR1Q9BY65 106 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 SLC25A22Q9H936 323 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 DAZ3Q9NR90 486 aaKnown RBP2.45□□□□□ -2.02
VPS35-203ENST00000562420 U3KQK5 164 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 FANCMQ8IYD8 2048 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 RALGAPA2Q2PPJ7 1873 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 DOCK8Q8NF50 2099 aa2.45□□□□□ -2.02
VPS35-203ENST00000562420 TRBV6-6A0A0A6YYG2 114 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 WI2-2373I1.2A0A1W2PRP0 233 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 FAM168BA1KXE4 195 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 PEX7O00628 323 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 PSPHP1O15172 72 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 ERC2-IT1O76042 136 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 HMGN2P05204 90 aaKnown RBP2.44□□□□□ -2.02
VPS35-203ENST00000562420 FCER1GP30273 86 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 CKS2P33552 79 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 SYNJ2BPP57105 145 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 HERVK_113P61574 105 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 CACNG7P62955 275 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 KLKP1Q107X0 134 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 KTN1-AS1Q86SY8 53 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 KLHL30-AS1Q8NEE0 82 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 DYNLRB2Q8TF09 96 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 ARHGAP5-AS1Q96IT6 56 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 IGF2BP2-AS1Q96M15 143 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 C18orf15Q96N68 181 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms