RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PTH2Q96A98 100 aa9.47□□□□□ -0.89
LDLR-205ENST00000557933 USP9XQ93008 2570 aaPredicted RBP9.47□□□□□ -0.89
LDLR-205ENST00000557933 IGLL5B9A064 214 aa9.47□□□□□ -0.89
LDLR-205ENST00000557933 MYOZ3Q8TDC0 251 aa9.47□□□□□ -0.89
LDLR-205ENST00000557933 PHLDA1Q8WV24 401 aaPredicted RBP9.47□□□□□ -0.89
LDLR-205ENST00000557933 NACAE9PAV3 2078 aa9.46□□□□□ -0.89
LDLR-205ENST00000557933 TRBV6-1A0A0K0K1D8 114 aa9.46□□□□□ -0.9
LDLR-205ENST00000557933 SCGB2A2Q13296 93 aa9.46□□□□□ -0.9
LDLR-205ENST00000557933 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.46□□□□□ -0.9
LDLR-205ENST00000557933 C12orf74Q32Q52 190 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 OR5A1Q8NGJ0 315 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 ZNF502Q8TBZ5 544 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 ZNF418Q8TF45 676 aaPredicted RBP9.45□□□□□ -0.9
LDLR-205ENST00000557933 PIEZO1Q92508 2521 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 LOC107984156A0A0G2JMH3 177 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 APOMO95445 188 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 ARL17AQ8IVW1 177 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 SPAG8Q99932 426 aaPredicted RBP9.45□□□□□ -0.9
LDLR-205ENST00000557933 BUB3O43684 328 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 IGHV3-11P01762 117 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 HLA-DRB4P13762 266 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 ARL3P36405 182 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 CD300EQ496F6 205 aaPredicted RBP9.45□□□□□ -0.9
LDLR-205ENST00000557933 TMEM78Q5T7P6 136 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 C20orf78Q9BR46 151 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 NXT2Q9NPJ8 142 aaKnown RBP9.45□□□□□ -0.9
LDLR-205ENST00000557933 HLA-DRB4X5D2U9 266 aa9.45□□□□□ -0.9
LDLR-205ENST00000557933 PRSS29PA6NIE9 313 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 TRBV12-3P01733 135 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 LAGE3Q14657 143 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 PTPN13Q12923 2485 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 WNK1Q9H4A3 2382 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 A0A1B0GWB2 263 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 NRACQ8N912 160 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 PLEKHB2Q96CS7 222 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 CCDC140Q96MF4 163 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 JPT2Q9H910 190 aa9.44□□□□□ -0.9
LDLR-205ENST00000557933 MYO18BQ8IUG5 2567 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 NIPBLQ6KC79 2804 aaeCLIP9.43□□□□□ -0.9
LDLR-205ENST00000557933 IGLV2-18A0A075B6J9 118 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 TRAV8-2A0A0B4J237 113 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 IGHV7-4-1A0A0J9YVY3 117 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 S100A4P26447 101 aaKnown RBP9.43□□□□□ -0.9
LDLR-205ENST00000557933 CEACAM3P40198 252 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 C8orf86Q6ZUL3 223 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 DPF1Q92782 380 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 CLPSL1A2RUU4 121 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 GAGE12HA6NDE8 117 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 SIVA1O15304 175 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 SCGB1D4Q6XE38 83 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 Q8N8P6 123 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 C16orf92Q96LL3 132 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 SCGB3A1Q96QR1 104 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 SPANXB1Q9NS25 103 aaPredicted RBP9.43□□□□□ -0.9
LDLR-205ENST00000557933 PGPEP1Q9NXJ5 209 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 ZFYVE26Q68DK2 2539 aa9.43□□□□□ -0.9
LDLR-205ENST00000557933 GNRH2O43555 120 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 ZFP2Q6ZN57 461 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 TTC9CQ8N5M4 171 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 C20orf173Q96LM9 149 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 UBTD1Q9HAC8 227 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 IGHV3-64A0A075B6Q5 118 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 EDN2P20800 178 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 Q8N9W7 124 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 NPBQ8NG41 125 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 ZMAT4Q9H898 229 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 FAM208BQ5VWN6 2430 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 UNQ9165/PRO28630Q6UXU0 137 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 FOXI2Q6ZQN5 318 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 CLUHP3Q96NS8 147 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 ZFAND3Q9H8U3 227 aa9.42□□□□□ -0.9
LDLR-205ENST00000557933 OR11H12B2RN74 326 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 H7C2G1 150 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 IGKV3-20P01619 116 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 OR11H1Q8NG94 326 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 OR11H2Q8NH07 326 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 MRPL16Q9NX20 251 aaKnown RBP9.41□□□□□ -0.9
LDLR-205ENST00000557933 FBN2P35556 2912 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 A0A1W2PPR1 153 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 LINC01549A6NIU2 74 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 E9PLD3 99 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 LINC01559Q495D7 138 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 CCDC144NLQ6NUI1 221 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 BRD3OSQ6XYD6 125 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 OR11H6Q8NGC7 330 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 PSMG3-AS1Q96PY0 264 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 SIGMAR1Q99720 223 aa9.41□□□□□ -0.9
LDLR-205ENST00000557933 SLC25A16P16260 332 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 PRTN3P24158 256 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 SRSF9Q13242 221 aaKnown RBP eCLIP9.4□□□□□ -0.9
LDLR-205ENST00000557933 GAGE13Q4V321 117 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 TIMD4Q96H15 378 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 CHTOPQ9Y3Y2 248 aaKnown RBP9.4□□□□□ -0.9
LDLR-205ENST00000557933 A0A087WWL8 130 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 A0A087WX48 190 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 RNASE4P34096 147 aaKnown RBP9.4□□□□□ -0.9
LDLR-205ENST00000557933 PSMB2P49721 201 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 RPL39P62891 51 aaKnown RBP9.4□□□□□ -0.9
LDLR-205ENST00000557933 PRADC1Q9BSG0 188 aa9.4□□□□□ -0.9
LDLR-205ENST00000557933 ABCA2Q9BZC7 2435 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms