RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 GUSBP11Q6P575 273 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 C5orf38Q86SI9 138 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 LINC00477Q96M19 166 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 SCGB3A1Q96QR1 104 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 PIMREGQ9BSJ6 248 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 SIT1Q9Y3P8 196 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 PLXNB1O43157 2135 aa7.33□□□□□ -1.24
SIX4-202ENST00000554079 A0A1W2PPC4 97 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 TRIAP1O43715 76 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 TRACP01848 142 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 TRGV3P03979 118 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 CNTFRP26992 372 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 DUX4L9Q6RFH8 374 aaPredicted RBP7.32□□□□□ -1.24
SIX4-202ENST00000554079 C14orf178Q8N769 122 aaPredicted RBP7.32□□□□□ -1.24
SIX4-202ENST00000554079 FAM19A4Q96LR4 140 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 IMMP1LQ96LU5 166 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 LMO7DNF2Z398 122 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 H3BRN7 92 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 H7C2G1 150 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 SDIM1Q6ZPB5 146 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 LINC00643Q86TS7 51 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 SHANK2-AS3Q9BTD1 123 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 SCNM1Q9BWG6 230 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 JPT2Q9H910 190 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 ZNRD1Q9P1U0 126 aa7.32□□□□□ -1.24
SIX4-202ENST00000554079 C11orf86A6NJI1 115 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 SCRG1O75711 98 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 ACYP1P07311 99 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 PI4KAP42356 2102 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 CXCL5P42830 114 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 PLGLAQ15195 96 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 DSCR8Q96T75 97 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 SMIM2Q9BVW6 85 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 PRO0628Q9UI54 55 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 ZNF256Q9Y2P7 627 aaPredicted RBP7.31□□□□□ -1.24
SIX4-202ENST00000554079 PYGO1Q9Y3Y4 419 aa7.31□□□□□ -1.24
SIX4-202ENST00000554079 IGLV4-69A0A075B6H9 119 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 IGHV3-21A0A0B4J1V1 117 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 TRAV26-2A0A0B4J265 109 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 COX6A1P12074 109 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 NXPH1P58417 271 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 ZNF833PQ6ZTB9 187 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 ZNRF1Q8ND25 227 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 UPK3BQ9BT76 320 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 BDP1A6H8Y1 2624 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 NCOR1O75376 2440 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 IGKV2-40A0A087WW87 121 aaPredicted RBP7.3□□□□□ -1.24
SIX4-202ENST00000554079 TRAV41A0A0B4J266 112 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 SRRM5B3KS81 715 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 IGKV2D-40P01614 121 aaPredicted RBP7.3□□□□□ -1.24
SIX4-202ENST00000554079 WT1P19544 449 aaPredicted RBP7.3□□□□□ -1.24
SIX4-202ENST00000554079 MRGPRG-AS1Q2M3A8 158 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 AGPAT4-IT1Q9H0P7 198 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 KLK15Q9H2R5 256 aa7.3□□□□□ -1.24
SIX4-202ENST00000554079 TTC28Q96AY4 2481 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 TMEM223A0PJW6 202 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 PINLYPA6NC86 204 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 ATOX1O00244 68 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 IGLV2-23P01705 113 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 IGLV3-19P01714 112 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 MAGEA5P43359 124 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 Q1RN00 199 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 ORMDL2Q53FV1 153 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 HCP5Q6MZN7 132 aa7.29□□□□□ -1.24
SIX4-202ENST00000554079 TINCRA0A1B0GVN0 87 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 A0A1W2PR77 199 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 MRPS21P82921 87 aaKnown RBP7.28□□□□□ -1.24
SIX4-202ENST00000554079 Q8TAT8 98 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 BEX4Q9NWD9 120 aaPredicted RBP7.28□□□□□ -1.24
SIX4-202ENST00000554079 TRIOO75962 3097 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 TPSG1Q9NRR2 321 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 ZGRF1Q86YA3 2104 aa7.28□□□□□ -1.24
SIX4-202ENST00000554079 CUL9Q8IWT3 2517 aa7.27□□□□□ -1.24
SIX4-202ENST00000554079 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.27□□□□□ -1.25
SIX4-202ENST00000554079 LY6LH3BQJ8 138 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 PDE6HQ13956 83 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 MUSTN1Q8IVN3 82 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 EEF1AKMT3Q96AZ1 226 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 LINC00574Q9H8X3 128 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 ICOSQ9Y6W8 199 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 SPEGQ15772 3267 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 LST1O00453 97 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 C2orf66Q6UXQ4 117 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 FAM216BQ8N7L0 139 aa7.27□□□□□ -1.25
SIX4-202ENST00000554079 TRBV7-1A0A0A6YYK4 115 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 RNF223E7ERA6 249 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 SPRY2O43597 315 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 IGKV1-17P01599 117 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 PAPPA-AS1Q5QFB9 102 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 FAM201AQ5SY85 155 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 RNF152Q8N8N0 203 aa7.26□□□□□ -1.25
SIX4-202ENST00000554079 J3QQQ9 107 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 DCANP1Q8TF63 244 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 TRAV13-1A0A0B4J241 112 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 TIMM8AO60220 97 aaPredicted RBP7.25□□□□□ -1.25
SIX4-202ENST00000554079 TSHBP01222 138 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 SEC61GP60059 68 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 TMEM30BQ3MIR4 351 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 LINC00336Q6ZUF6 198 aa7.25□□□□□ -1.25
SIX4-202ENST00000554079 C8orf31Q8N9H6 132 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms