RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FHITP49789 147 aa9.84□□□□□ -0.83
USP28-209ENST00000540925 FGF8P55075 233 aaPredicted RBP9.84□□□□□ -0.83
USP28-209ENST00000540925 FLI1Q01543 452 aaPredicted RBP9.84□□□□□ -0.83
USP28-209ENST00000540925 LINC00479Q96M42 142 aa9.84□□□□□ -0.83
USP28-209ENST00000540925 C8orf49Q96NF6 230 aa9.84□□□□□ -0.83
USP28-209ENST00000540925 MAP1LC3BQ9GZQ8 125 aa9.84□□□□□ -0.83
USP28-209ENST00000540925 A0A1B0GVY2 172 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 K7EQM0 130 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 M0R2N4 97 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 GNRH2O43555 120 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 TYMSP04818 313 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 CCL18P55774 89 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 FHL2Q14192 279 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 LINC00336Q6ZUF6 198 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 NDFIP1Q9BT67 221 aa9.83□□□□□ -0.84
USP28-209ENST00000540925 NKX6-2Q9C056 277 aaPredicted RBP9.83□□□□□ -0.84
USP28-209ENST00000540925 A0A096LPF7 62 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 UBE2G2P60604 165 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 ESRGQ1W209 222 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 IQCF2Q8IXL9 164 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 MBD3L1Q8WWY6 194 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 KCNS1Q96KK3 526 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 UPK3BQ9BT76 320 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 NAGKQ9UJ70 344 aa9.82□□□□□ -0.84
USP28-209ENST00000540925 UMAD1C9J7I0 102 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 PEX7O00628 323 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 GCGP01275 180 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 PFN1P07737 140 aaKnown RBP9.81□□□□□ -0.84
USP28-209ENST00000540925 SMUG1Q53HV7 270 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 SAPCD1Q5SSQ6 148 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 Q6ZNX1 250 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 COX8CQ7Z4L0 72 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 PRNTQ86SH4 94 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 HIST1H2BAQ96A08 127 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 ARL2-SNX15V9GYD0 113 aa9.81□□□□□ -0.84
USP28-209ENST00000540925 TRAV34A0A0B4J273 112 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 NBDYA0A0U1RRE5 68 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 IGHV3-53P01767 116 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 CRYBA4P53673 196 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 TMUB2Q71RG4 321 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 Q86TA4 180 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 TCTE3Q8IZS6 198 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 STOML3Q8TAV4 291 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 ZNF479Q96JC4 524 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 TCEAL7Q9BRU2 100 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 ZNF471Q9BX82 626 aaPredicted RBP9.8□□□□□ -0.84
USP28-209ENST00000540925 SDF2L1Q9HCN8 221 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 PRO0255Q9UI72 69 aa9.8□□□□□ -0.84
USP28-209ENST00000540925 KANTRA0A1W2PQU2 76 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 M0R2P5 195 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 IFNA7P01567 189 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 SLAQ13239 276 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 DPPA3Q6W0C5 159 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 C9orf85Q96MD7 179 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 HHLA3Q9XRX5 114 aa9.79□□□□□ -0.84
USP28-209ENST00000540925 MRPS16Q9Y3D3 137 aaKnown RBP9.79□□□□□ -0.84
USP28-209ENST00000540925 TRAV4A0A0B4J268 109 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 TRBV6-1A0A0K0K1D8 114 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 PAX4O43316 350 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 SFTA3P0C7M3 94 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 PTH2Q96A98 100 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 KRTAP1-5Q9BYS1 174 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 LRP1BQ9NZR2 4599 aa9.78□□□□□ -0.84
USP28-209ENST00000540925 IGKV3D-20A0A0C4DH25 116 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 RNASE3P12724 160 aaKnown RBP9.77□□□□□ -0.85
USP28-209ENST00000540925 CRIP1P50238 77 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 PPT1P50897 306 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 LGALSLQ3ZCW2 172 aaPredicted RBP9.77□□□□□ -0.85
USP28-209ENST00000540925 ZFP69Q49AA0 526 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 ZNF575Q86XF7 245 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 FAM213BQ8TBF2 198 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 Q9H8V8 135 aa9.77□□□□□ -0.85
USP28-209ENST00000540925 PRSS29PA6NIE9 313 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 LTAP01374 205 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 TPT1P13693 172 aaKnown RBP9.76□□□□□ -0.85
USP28-209ENST00000540925 EIF5AP63241 154 aaKnown RBP9.76□□□□□ -0.85
USP28-209ENST00000540925 C1orf134Q5TEV5 83 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 SFT2D1Q8WV19 159 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 FMC1Q96HJ9 113 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 ZFP30Q9Y2G7 519 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 ICOSQ9Y6W8 199 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 DNAH5Q8TE73 4624 aa9.76□□□□□ -0.85
USP28-209ENST00000540925 FABP5P3A8MUU1 101 aa9.75□□□□□ -0.85
USP28-209ENST00000540925 PAGE4O60829 102 aa9.75□□□□□ -0.85
USP28-209ENST00000540925 PFDN1O60925 122 aa9.75□□□□□ -0.85
USP28-209ENST00000540925 C1QBP02746 253 aa9.75□□□□□ -0.85
USP28-209ENST00000540925 ZC2HC1AQ96GY0 325 aa9.75□□□□□ -0.85
USP28-209ENST00000540925 TRAV1-1A0A0B4J248 108 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 TRGV4A0A0C4DH28 118 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 K7EQD1 137 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 GATA1P15976 413 aaPredicted RBP9.74□□□□□ -0.85
USP28-209ENST00000540925 MRPL23Q16540 153 aaKnown RBP9.74□□□□□ -0.85
USP28-209ENST00000540925 ZNF876PQ49A33 203 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 DNLZQ5SXM8 178 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 CFAP126Q5VTH2 177 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 CST9LP1Q5W188 147 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 OR4C5Q8NGB2 326 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 ABCA13Q86UQ4 5058 aa9.74□□□□□ -0.85
USP28-209ENST00000540925 A0A1W2PPQ1 181 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 PGPEP1LA6NFU8 196 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms