RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ZNF575Q86XF7 245 aa13.71□□□□□ -0.21
TNFRSF1A-213ENST00000540022 TMEM256Q8N2U0 113 aa13.71□□□□□ -0.21
TNFRSF1A-213ENST00000540022 PYGO2Q9BRQ0 406 aa13.71□□□□□ -0.21
TNFRSF1A-213ENST00000540022 IGHV1OR15-1A0A075B7D0 117 aa13.7□□□□□ -0.22
TNFRSF1A-213ENST00000540022 HTN1P15515 57 aa13.7□□□□□ -0.22
TNFRSF1A-213ENST00000540022 LINC01559Q495D7 138 aa13.7□□□□□ -0.22
TNFRSF1A-213ENST00000540022 CLRN3Q8NCR9 226 aa13.7□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RNF183Q96D59 192 aa13.7□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TMSB15BA0A087X1C1 80 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 B4DEV8 164 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 GATCO43716 136 aaKnown RBP13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TDRG1Q3Y452 100 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RNF212Q495C1 297 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 SVBPQ8N300 66 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 OR2D3Q8NGH3 330 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 OR10G8Q8NGN5 311 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RCHY1Q96PM5 261 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 B9D2Q9BPU9 175 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TP53TG3Q9ULZ0 132 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TMEM189A5PLL7 270 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 ZNF705GA8MUZ8 300 aaPredicted RBP13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 GNRH2O43555 120 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 C15orf54Q8N8G6 183 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 LINC00467Q9BRT7 94 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RPP21Q9H633 154 aaKnown RBP13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 V9GYV3 84 aa13.69□□□□□ -0.22
TNFRSF1A-213ENST00000540022 HUWE1Q7Z6Z7 4374 aaKnown RBP13.68□□□□□ -0.22
TNFRSF1A-213ENST00000540022 KCNS1Q96KK3 526 aa13.68□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RETNQ9HD89 108 aa13.68□□□□□ -0.22
TNFRSF1A-213ENST00000540022 X6R8D5 127 aa13.68□□□□□ -0.22
TNFRSF1A-213ENST00000540022 GRIFINA4D1Z8 144 aa13.67□□□□□ -0.22
TNFRSF1A-213ENST00000540022 SPRY2O43597 315 aa13.67□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TYMSP04818 313 aa13.67□□□□□ -0.22
TNFRSF1A-213ENST00000540022 AZU1P20160 251 aa13.67□□□□□ -0.22
TNFRSF1A-213ENST00000540022 OVOL2Q9BRP0 275 aa13.67□□□□□ -0.22
TNFRSF1A-213ENST00000540022 C7orf77A4D0Y5 90 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 CBY3A6NI87 242 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 SNAPINO95295 136 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 MT-ND4LP03901 98 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 GZMBP10144 247 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 OR11H2Q8NH07 326 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 TP53TG1Q9Y2A0 90 aa13.66□□□□□ -0.22
TNFRSF1A-213ENST00000540022 NEU1Q99519 415 aa13.65□□□□□ -0.22
TNFRSF1A-213ENST00000540022 RHEBQ15382 184 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 RRN3P1Q2M238 152 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 CT83Q5H943 113 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ATRAIDQ6UW56 229 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ANAPC16Q96DE5 110 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TM2D3Q9BRN9 247 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 MDFICQ9P1T7 246 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 IGHV3-16A0A0C4DH30 117 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 PPP1R2P9O14990 202 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 RPS20P60866 119 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 RPS10P5Q9NQ39 176 aa13.64□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TRGV11A0A075B6L2 103 aa13.63□□□□□ -0.23
TNFRSF1A-213ENST00000540022 CXCL1P09341 107 aa13.63□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ASIPP42127 132 aa13.63□□□□□ -0.23
TNFRSF1A-213ENST00000540022 RNASE8Q8TDE3 154 aaKnown RBP13.63□□□□□ -0.23
TNFRSF1A-213ENST00000540022 XKRY2A2RUG3 117 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 SMIM9A6NGZ8 99 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 A8MWL6 223 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 RNASE3P12724 160 aaKnown RBP13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 S100A1P23297 94 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 DNLZQ5SXM8 178 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 C11orf72Q8NBR9 251 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TSKUQ8WUA8 353 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TMEM263Q8WUH6 116 aaKnown RBP13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 GTSF1Q8WW33 167 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 SPATA25Q9BR10 227 aa13.62□□□□□ -0.23
TNFRSF1A-213ENST00000540022 A0A087WWC5 75 aa13.61□□□□□ -0.23
TNFRSF1A-213ENST00000540022 S100A4P26447 101 aaKnown RBP13.61□□□□□ -0.23
TNFRSF1A-213ENST00000540022 CTDSP1Q9GZU7 261 aa13.61□□□□□ -0.23
TNFRSF1A-213ENST00000540022 GSN-AS1Q9NRJ2 163 aa13.61□□□□□ -0.23
TNFRSF1A-213ENST00000540022 PLAC8L1A1L4L8 177 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 H3BVH4 76 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ARMS2P0C7Q2 107 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 IGLC6P0CF74 106 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TCL1AP56279 114 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ZNF493Q6ZR52 646 aa13.6□□□□□ -0.23
TNFRSF1A-213ENST00000540022 IGHV4-28A0A0C4DH34 117 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 MIFP14174 115 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 ZNF415Q09FC8 603 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 FER1L6-AS1Q8NA97 138 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 Q8NAQ8 132 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 C16orf74Q96GX8 76 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 C9orf85Q96MD7 179 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 IL36BQ9NZH7 164 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TIMM8BQ9Y5J9 83 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 SMIM27A0A1W2PRY6 76 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TPPP3Q9BW30 176 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 SSBP4Q9BWG4 385 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 GFRA4Q9GZZ7 299 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 TMEM242Q9NWH2 141 aa13.59□□□□□ -0.23
TNFRSF1A-213ENST00000540022 STAB2Q8WWQ8 2551 aa13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 FAM231BA6NCW3 169 aa13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 DEFB4AO15263 64 aa13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 FOXA3P55318 350 aaPredicted RBP13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 IL17DQ8TAD2 202 aa13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 SCRT2Q9NQ03 307 aa13.58□□□□□ -0.24
TNFRSF1A-213ENST00000540022 A0A1W2PPQ1 181 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms