RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 DNAH11Q96DT5 4516 aa1.18□□□□□ -2.22
CD44-233ENST00000531141 BORCS7-ASMTA0A0B4J1R7 106 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 A0A0G2JMM0 328 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 A0A0J9YY10 115 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 A0A1W2PPB8 328 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 A0A1W2PRE2 83 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 A0A1W2PRS3 328 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 RIIAD1A6NNX1 92 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 KIR3DP1A8MWS1 328 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 OR2J2O76002 312 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 GPX1P07203 203 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 OR10J4P0C629 311 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 ZNF705DP0CH99 300 aaPredicted RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 RPL27AP46776 148 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 SERPINB10P48595 397 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 SPINT3P49223 89 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 TAS2R20P59543 309 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 RPS20P60866 119 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 AP1S1P61966 158 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 HIST1H4AP62805 103 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 RPS28P62857 69 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 HBA1P69905 142 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 CCL20P78556 96 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 LRP2P98164 4655 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 AKR1C1Q04828 323 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 SURF2Q15527 256 aaPredicted RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 BRMS1LQ5PSV4 323 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 LYRM7Q5U5X0 104 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 LGALS9CQ6DKI2 356 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 RPL22L1Q6P5R6 122 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 AMTNQ6UX39 209 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 Q6ZSA8 131 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 DHFR2Q86XF0 187 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 GPHB5Q86YW7 130 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 ZNF283Q8N7M2 679 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 PLPP5Q8NEB5 264 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 FNDC9Q8TBE3 224 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 RAB2BQ8WUD1 216 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 LZICQ8WZA0 190 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 ISOC1Q96CN7 298 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 ZNF625Q96I27 306 aaPredicted RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 HSPB9Q9BQS6 159 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 RTL8AQ9BWD3 113 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 HEATR1Q9H583 2144 aaKnown RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 SS18L2Q9UHA2 77 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 SNX12Q9UMY4 172 aa1.17□□□□□ -2.22
CD44-233ENST00000531141 FCGBPQ9Y6R7 5405 aaPredicted RBP1.17□□□□□ -2.22
CD44-233ENST00000531141 DNAH5Q8TE73 4624 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 FAT2Q9NYQ8 4349 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 IGLV3-9A0A075B6K5 115 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 A0A087WUU8 490 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 UQCRHLA0A096LP55 91 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 A0A1B0GX51 115 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 UBE2L6O14933 153 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 PLA2G10O15496 165 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 ARPC5O15511 151 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 NPYP01303 97 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 TFPTP0C1Z6 253 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 GPX2P18283 190 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BOP23527 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BBP33778 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 GLRXP35754 106 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 GABRA2P47869 451 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 ATP5G3P48201 142 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 RAB13P51153 203 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 RBM11P57052 281 aaKnown RBP1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BDP58876 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 SNRPFP62306 86 aaKnown RBP1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BCP62807 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST2H2BEQ16778 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 LGALS9BQ3B8N2 356 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.16□□□□□ -2.22
CD44-233ENST00000531141 SSX8Q7RTT4 187 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 SBSPONQ8IVN8 264 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 GRPEL2Q8TAA5 225 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BHQ93079 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BNQ99877 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 HIST1H2BMQ99879 126 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 DOHHQ9BU89 302 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 EFCAB11Q9BUY7 163 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 EFCAB1Q9HAE3 211 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 RASL12Q9NYN1 266 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 PRO2289Q9P1D8 64 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 BOKQ9UMX3 212 aaPredicted RBP1.16□□□□□ -2.22
CD44-233ENST00000531141 LAMTOR2Q9Y2Q5 125 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 NUBP2Q9Y5Y2 271 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 NCKAP5O14513 1909 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 ARHGAP32A7KAX9 2087 aa1.16□□□□□ -2.22
CD44-233ENST00000531141 SNRNP200O75643 2136 aaKnown RBP1.15□□□□□ -2.23
CD44-233ENST00000531141 FAT1Q14517 4588 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 IGHV3-15A0A0B4J1V0 119 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 DUXBA0A1W2PPF3 345 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 IRGMA1A4Y4 181 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 TMEM235A6NFC5 223 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 TXNDC9O14530 226 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 GGCTO75223 188 aaKnown RBP1.15□□□□□ -2.23
CD44-233ENST00000531141 PRM2P04554 102 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 DBIP07108 87 aaKnown RBP1.15□□□□□ -2.23
CD44-233ENST00000531141 PAEPP09466 180 aa1.15□□□□□ -2.23
CD44-233ENST00000531141 CCL3P10147 92 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms