RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 OR10J6PQ8NGY7 276 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 BORCS7Q96B45 105 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 MS4A6AQ9H2W1 248 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 LENEPQ9Y5L5 61 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 GPX1P07203 203 aa14.13□□□□□ -0.15
VPS28-207ENST00000526977 IGLC6P0CF74 106 aa14.13□□□□□ -0.15
VPS28-207ENST00000526977 FER1L6-AS1Q8NA97 138 aa14.13□□□□□ -0.15
VPS28-207ENST00000526977 DCANP1Q8TF63 244 aa14.13□□□□□ -0.15
VPS28-207ENST00000526977 C11orf21Q9P2W6 132 aa14.13□□□□□ -0.15
VPS28-207ENST00000526977 ID1P41134 155 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 C3orf56Q8N813 242 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 LINC00482Q8N8I6 264 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 KCNS1Q96KK3 526 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 IGKV3D-20A0A0C4DH25 116 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 CTRLP40313 264 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 SSTP61278 116 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 C12orf54Q6X4T0 127 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 SAMD10Q9BYL1 202 aa14.12□□□□□ -0.15
VPS28-207ENST00000526977 TRAV25A0A0B4J276 109 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 MUC21A0A0G2JKD1 596 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 MUC21A0A140T8X8 626 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 F6UB75 175 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 CD33P20138 364 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 MUC21Q5SSG8 566 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 Q6ZQT7 251 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 ZNF493Q6ZR52 646 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 OR8A1Q8NGG7 326 aa14.11□□□□□ -0.15
VPS28-207ENST00000526977 TRAV2A0A0B4J234 112 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 WFDC3Q8IUB2 231 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 TENM1Q9UKZ4 2725 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 WNK1Q9H4A3 2382 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 PRR9Q5T870 116 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 SHISA2Q6UWI4 295 aa14.1□□□□□ -0.15
VPS28-207ENST00000526977 FBN1P35555 2871 aaKnown RBP14.1□□□□□ -0.15
VPS28-207ENST00000526977 K7EQG2 157 aa14.09□□□□□ -0.15
VPS28-207ENST00000526977 SAP30O75446 220 aa14.09□□□□□ -0.15
VPS28-207ENST00000526977 SNRPD3P62318 126 aaKnown RBP14.09□□□□□ -0.15
VPS28-207ENST00000526977 CD300EQ496F6 205 aaPredicted RBP14.09□□□□□ -0.15
VPS28-207ENST00000526977 TMEM61Q8N0U2 210 aa14.09□□□□□ -0.15
VPS28-207ENST00000526977 ZFAND2AQ8N6M9 145 aa14.09□□□□□ -0.15
VPS28-207ENST00000526977 FAM19A4Q96LR4 140 aa14.09□□□□□ -0.15
VPS28-207ENST00000526977 ZNF324O75467 553 aaPredicted RBP14.08□□□□□ -0.15
VPS28-207ENST00000526977 NIT1Q86X76 327 aa14.08□□□□□ -0.15
VPS28-207ENST00000526977 SCGB1D1O95968 90 aa14.08□□□□□ -0.16
VPS28-207ENST00000526977 NTF3P20783 257 aa14.08□□□□□ -0.16
VPS28-207ENST00000526977 TFPI2P48307 235 aa14.08□□□□□ -0.16
VPS28-207ENST00000526977 AMTP48728 403 aa14.08□□□□□ -0.16
VPS28-207ENST00000526977 URB1-AS1Q96HZ7 61 aa14.08□□□□□ -0.16
VPS28-207ENST00000526977 TWIST1Q15672 202 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 FAM19A2Q8N3H0 131 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 SPAG8Q99932 426 aaPredicted RBP14.07□□□□□ -0.16
VPS28-207ENST00000526977 CNFNQ9BYD5 112 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 NAGKQ9UJ70 344 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 PMCHP20382 165 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 PKIAP61925 76 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 ZNF664Q8N3J9 261 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 OR2K2Q8NGT1 345 aa14.07□□□□□ -0.16
VPS28-207ENST00000526977 FAM104BQ5XKR9 115 aa14.06□□□□□ -0.16
VPS28-207ENST00000526977 PRO1933Q9H354 126 aa14.06□□□□□ -0.16
VPS28-207ENST00000526977 J3KRW8 73 aa14.05□□□□□ -0.16
VPS28-207ENST00000526977 IGLV1-51P01701 117 aa14.05□□□□□ -0.16
VPS28-207ENST00000526977 MSRB1Q9NZV6 116 aa14.05□□□□□ -0.16
VPS28-207ENST00000526977 OR4C46A6NHA9 309 aa14.05□□□□□ -0.16
VPS28-207ENST00000526977 INSL3P51460 131 aa14.05□□□□□ -0.16
VPS28-207ENST00000526977 RNASEKQ6P5S7 137 aaKnown RBP14.05□□□□□ -0.16
VPS28-207ENST00000526977 TRBV7-9A0A0J9YWB2 115 aa14.04□□□□□ -0.16
VPS28-207ENST00000526977 APRG1Q8IVJ8 170 aa14.04□□□□□ -0.16
VPS28-207ENST00000526977 AMN1Q8IY45 258 aa14.04□□□□□ -0.16
VPS28-207ENST00000526977 HSBP1O75506 76 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 ZNF688P0C7X2 276 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 TRAV21A0A0B4J279 112 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 RNASE4P34096 147 aaKnown RBP14.03□□□□□ -0.16
VPS28-207ENST00000526977 KIR3DS1Q14943 382 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 PSMG4Q5JS54 123 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 WFDC9Q8NEX5 89 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 MCRIP2Q9BUT9 160 aaKnown RBP14.03□□□□□ -0.16
VPS28-207ENST00000526977 U3KQK5 164 aa14.03□□□□□ -0.16
VPS28-207ENST00000526977 TSTD3H0UI37 97 aa14.02□□□□□ -0.16
VPS28-207ENST00000526977 TMEM191AQ9H0A3 160 aa14.02□□□□□ -0.16
VPS28-207ENST00000526977 ZNF256Q9Y2P7 627 aaPredicted RBP14.02□□□□□ -0.16
VPS28-207ENST00000526977 LINC00614P0C842 121 aa14.02□□□□□ -0.17
VPS28-207ENST00000526977 MRPL51Q4U2R6 128 aaKnown RBP14.02□□□□□ -0.17
VPS28-207ENST00000526977 C9orf66Q5T8R8 295 aa14.02□□□□□ -0.17
VPS28-207ENST00000526977 CHCHD1Q96BP2 118 aaKnown RBP14.01□□□□□ -0.17
VPS28-207ENST00000526977 D6R8Y8 96 aa14□□□□□ -0.17
VPS28-207ENST00000526977 KRTDAPP60985 99 aa14□□□□□ -0.17
VPS28-207ENST00000526977 Q8N976 141 aa14□□□□□ -0.17
VPS28-207ENST00000526977 M0R2Z0 102 aa14□□□□□ -0.17
VPS28-207ENST00000526977 OR5AL1P0C617 328 aa14□□□□□ -0.17
VPS28-207ENST00000526977 DMRTA1Q5VZB9 504 aa14□□□□□ -0.17
VPS28-207ENST00000526977 KLLNB2CW77 178 aa13.99□□□□□ -0.17
VPS28-207ENST00000526977 SNAI2O43623 268 aa13.99□□□□□ -0.17
VPS28-207ENST00000526977 CMC4P56277 68 aaPredicted RBP13.99□□□□□ -0.17
VPS28-207ENST00000526977 EBLN2Q6P2I7 272 aa13.99□□□□□ -0.17
VPS28-207ENST00000526977 OR10AG1Q8NH19 301 aa13.99□□□□□ -0.17
VPS28-207ENST00000526977 RNF185Q96GF1 192 aa13.99□□□□□ -0.17
VPS28-207ENST00000526977 A0A0J9YX75 114 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 DDTP30046 118 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 TEX43Q6ZNM6 134 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 ORMDL3Q8N138 153 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms