RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 DNAH10OSP0CZ25 163 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 KRTAP10-1P60331 282 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 RANP62826 216 aaKnown RBP4.52□□□□□ -1.69
CD44-221ENST00000526000 ICAM4Q14773 271 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 TTC32Q5I0X7 151 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 GFI1BQ5VTD9 330 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 ZNF493Q6ZR52 646 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 IQCF2Q8IXL9 164 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 TMEM256Q8N2U0 113 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 RNASE8Q8TDE3 154 aaKnown RBP4.52□□□□□ -1.69
CD44-221ENST00000526000 TMEM263Q8WUH6 116 aaKnown RBP4.52□□□□□ -1.69
CD44-221ENST00000526000 LINC00477Q96M19 166 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 SMDT1Q9H4I9 107 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 GSN-AS1Q9NRJ2 163 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 MRPS16Q9Y3D3 137 aaKnown RBP4.52□□□□□ -1.69
CD44-221ENST00000526000 LENEPQ9Y5L5 61 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 DNAH5Q8TE73 4624 aa4.52□□□□□ -1.69
CD44-221ENST00000526000 TRGV2A0A075B6R0 118 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 PGPA6NDG6 321 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 DIRC3C9JPN6 131 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 HMGB3O15347 200 aaKnown RBP4.51□□□□□ -1.69
CD44-221ENST00000526000 PDE6DO43924 150 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 CT45A10P0DMU9 189 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 FGF8P55075 233 aaPredicted RBP4.51□□□□□ -1.69
CD44-221ENST00000526000 SUMO1P63165 101 aaKnown RBP4.51□□□□□ -1.69
CD44-221ENST00000526000 ERCC8Q13216 396 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 TMEM78Q5T7P6 136 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 Q5VSD8 79 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 C9orf47Q6ZRZ4 202 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 CYB561D1Q8N8Q1 229 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 VSIG2Q96IQ7 327 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 PGPEP1Q9NXJ5 209 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 EPDR1Q9UM22 224 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 KLF12Q9Y4X4 402 aa4.51□□□□□ -1.69
CD44-221ENST00000526000 FLG2Q5D862 2391 aaPredicted RBP4.5□□□□□ -1.69
CD44-221ENST00000526000 APOBP04114 4563 aaKnown RBP4.5□□□□□ -1.69
CD44-221ENST00000526000 TRGV1A0A0A0MS02 117 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 TRBV6-1A0A0K0K1D8 114 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 GGTLC3B5MD39 225 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 NPIPB6E9PJ23 425 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 RGS13O14921 159 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 EREGO14944 169 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 SIVA1O15304 175 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 PAGE4O60829 102 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 NXPH4O95158 308 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 TCRAP04437 139 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 BCL2P10415 239 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 BTF3P20290 206 aaKnown RBP4.5□□□□□ -1.69
CD44-221ENST00000526000 RNASE4P34096 147 aaKnown RBP4.5□□□□□ -1.69
CD44-221ENST00000526000 LEPP41159 167 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 MEF2BQ02080 365 aaPredicted RBP4.5□□□□□ -1.69
CD44-221ENST00000526000 CLLU1Q5K131 121 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 CST9LP1Q5W188 147 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 Q6ZQT7 251 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 EXOC3-AS1Q8N2X6 119 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 TMEM75Q8N9X5 138 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 FRZBQ92765 325 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 C20orf144Q9BQM9 153 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 VAX2Q9UIW0 290 aa4.5□□□□□ -1.69
CD44-221ENST00000526000 TMEM250H0YL14 139 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 M0R3E3 92 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 PEX7O00628 323 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 PAX4O43316 350 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 CRISP2P16562 243 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 ZNF138P52744 262 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 UBE2G2P60604 165 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 ZNF506Q5JVG8 444 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 SAPCD1Q5SSQ6 148 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 Q6ZRN7 208 aaPredicted RBP4.49□□□□□ -1.69
CD44-221ENST00000526000 LINC00612Q8N6U2 182 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 C11orf52Q96A22 123 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 SMIM12Q96EX1 92 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 FMC1Q96HJ9 113 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 FAM210AQ96ND0 272 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 C8orf49Q96NF6 230 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 NDFIP1Q9BT67 221 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 UPK3BQ9BT76 320 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 MED9Q9NWA0 146 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 MRPL16Q9NX20 251 aaKnown RBP4.49□□□□□ -1.69
CD44-221ENST00000526000 ZNF492Q9P255 531 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 GNG13Q9P2W3 67 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 TP53TG3Q9ULZ0 132 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 ZFP30Q9Y2G7 519 aa4.49□□□□□ -1.69
CD44-221ENST00000526000 A0A087WTM6 91 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 A0A1B0GV50 99 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 A0A1W2PPQ1 181 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 RAB19A4D1S5 217 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 RBFOX3A6NFN3 312 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 ZNF324O75467 553 aaPredicted RBP4.48□□□□□ -1.69
CD44-221ENST00000526000 EIF3GO75821 320 aaKnown RBP eCLIP4.48□□□□□ -1.69
CD44-221ENST00000526000 AKR1C3P42330 323 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 ERVFC1-1P60608 527 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 UBE2G1P62253 170 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 CCL20P78556 96 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 FLI1Q01543 452 aaPredicted RBP4.48□□□□□ -1.69
CD44-221ENST00000526000 BTN1A1Q13410 526 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 PEA15Q15121 130 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 TMEM183BQ1AE95 376 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 LYPD5Q6UWN5 251 aa4.48□□□□□ -1.69
CD44-221ENST00000526000 GOLT1AQ6ZVE7 132 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms