RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 TMSB15BA0A087X1C1 80 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 C11orf94C9JXX5 98 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 FXYD1O00168 92 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 PEX7O00628 323 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 IGHV3-48P01763 117 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 IGKV3-11P04433 115 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 PIRTP0C851 137 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 CGB3P0DN86 165 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 CGB7P0DN87 165 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 CD28P10747 220 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 PTHLHP12272 177 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 PIPP12273 146 aaPredicted RBP1.54□□□□□ -2.16
CD44-216ENST00000525293 CCL4P13236 92 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 FXYD2P54710 66 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 EGFEM1PQ0D2K5 195 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 FAM229BQ4G0N7 80 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 NCBP2-AS2Q69YL0 99 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 NOXRED1Q6NXP6 359 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 Q6P435 159 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 FAM216BQ8N7L0 139 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 TRGV9Q99603 122 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 MGST2Q99735 147 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 SLC50A1Q9BRV3 221 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 BPESC1Q9GZL8 116 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 LY96Q9Y6Y9 160 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 MED1Q15648 1581 aaPredicted RBP1.54□□□□□ -2.16
CD44-216ENST00000525293 KIAA0556O60303 1618 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 COL5A3P25940 1745 aaPredicted RBP1.54□□□□□ -2.16
CD44-216ENST00000525293 XRN1Q8IZH2 1706 aaKnown RBP1.54□□□□□ -2.16
CD44-216ENST00000525293 GPR179Q6PRD1 2367 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 DOPEY1Q5JWR5 2465 aa1.54□□□□□ -2.16
CD44-216ENST00000525293 SETD2Q9BYW2 2564 aaPredicted RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 TRBV6-7A0A0A0MS04 114 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 LOC107984156A0A0G2JMH3 177 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 LOC285095A0A1B0GVY8 99 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 C2orf70A6NJV1 201 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 FAM223BA6NKX1 122 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 E7EQL1 145 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 PANO1I0J062 215 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 FLNBO75369 2602 aaKnown RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 CPSF4O95639 269 aaKnown RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 APCSP02743 223 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 TFF1P04155 84 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 CCL5P13501 91 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ANK1P16157 1881 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 PEBP1P30086 187 aaKnown RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 CKS2P33552 79 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 HELZP42694 1942 aaKnown RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 CAV3P56539 151 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 DYNLT1P63172 113 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 TCHHQ07283 1943 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 TIAM1Q13009 1591 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 RHOHQ15669 191 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ZNF791Q3KP31 576 aaPredicted RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 SFTA2Q6UW10 78 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 PP632Q6XCG6 107 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ATP11AUNQ6ZP68 121 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ZCCHC23Q6ZST2 131 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 MICAL3Q7RTP6 2002 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 LOXHD1Q8IVV2 1947 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ARL17AQ8IVW1 177 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 KMT2EQ8IZD2 1858 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 LINC00269Q8N2A0 174 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 EHBP1L1Q8N3D4 1523 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 MYO3AQ8NEV4 1616 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 NUP205Q92621 2012 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 FAM104AQ969W3 186 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 ATG2BQ96BY7 2078 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 LINC01600Q96MT4 127 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 SCN2AQ99250 2005 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 B9D2Q9BPU9 175 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 KIAA0586Q9BVV6 1533 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 KIAA1671Q9BY89 1806 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 THSD7BQ9C0I4 1608 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 FGF23Q9GZV9 251 aaPredicted RBP1.53□□□□□ -2.16
CD44-216ENST00000525293 UGGT1Q9NYU2 1555 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 TAS2R4Q9NYW5 299 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 TAC3Q9UHF0 121 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 NWD2Q9ULI1 1742 aa1.53□□□□□ -2.16
CD44-216ENST00000525293 C2orf16Q68DN1 1984 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 RALGAPA2Q2PPJ7 1873 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 TANC1Q9C0D5 1861 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 PLXNA4Q9HCM2 1894 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 PPLO60437 1756 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 KDM3BQ7LBC6 1761 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 SCN11AQ9UI33 1791 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 IFT172Q9UG01 1749 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 PCLOQ9Y6V0 5065 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 NESP48681 1621 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 LTBP4Q8N2S1 1624 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 ABCA5Q8WWZ7 1642 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 PTPRMP28827 1452 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 NKTRP30414 1462 aaKnown RBP1.52□□□□□ -2.17
CD44-216ENST00000525293 ATP7BP35670 1465 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 TRBV7-1A0A0A6YYK4 115 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 A0A0D9SFI3 127 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 C19orf71A6NCJ1 209 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 CRYM-AS1A6NIL9 109 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 A6NIN4 97 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 C16orf90A8MZG2 172 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms