RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SMIM6P0DI80 62 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 COX4I1P13073 169 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 RPL35P42766 123 aaKnown RBP1.37□□□□□ -2.19
USP53-204ENST00000507906 PSPHP78330 225 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 NEDD8Q15843 81 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 C1orf134Q5TEV5 83 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 SMIM15Q7Z3B0 74 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 RPS19BP1Q86WX3 136 aaKnown RBP1.37□□□□□ -2.19
USP53-204ENST00000507906 C9orf62Q8N4C0 152 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 Q8N814 137 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 OR4C6Q8NH72 309 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 POP5Q969H6 163 aaKnown RBP1.37□□□□□ -2.19
USP53-204ENST00000507906 BORCS8Q96FH0 119 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 LINC00052Q96N35 136 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 TMEM70Q9BUB7 260 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 CCDC32Q9BV29 185 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 MED9Q9NWA0 146 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 SOX21Q9Y651 276 aaPredicted RBP1.37□□□□□ -2.19
USP53-204ENST00000507906 NUP210Q8TEM1 1887 aaPredicted RBP1.37□□□□□ -2.19
USP53-204ENST00000507906 CR1P17927 2039 aa1.37□□□□□ -2.19
USP53-204ENST00000507906 ROBO1Q9Y6N7 1651 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 CASP8AP2Q9UKL3 1982 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 A0A1B0GV90 55 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 TRDV1A0A1B0GX56 115 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 C9orf170A2RU37 121 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 MPC2O95563 127 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 DHFRP00374 187 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 IFNGP01579 166 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 S100PP25815 95 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 ZNF93P35789 620 aaPredicted RBP1.36□□□□□ -2.19
USP53-204ENST00000507906 AKR1D1P51857 326 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 TFAMQ00059 246 aaKnown RBP1.36□□□□□ -2.19
USP53-204ENST00000507906 HSD17B12Q53GQ0 312 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 TEX261Q6UWH6 196 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 HRCT1Q6UXD1 115 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 ZCCHC23Q6ZST2 131 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 ANGPTL5Q86XS5 388 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 PRR15Q8IV56 129 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 OR2T35Q8NGX2 323 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 C1orf54Q8WWF1 131 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 LINC00467Q9BRT7 94 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 LXNQ9BS40 222 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 DDA1Q9BW61 102 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 LRTM1Q9HBL6 345 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 U3KQ87 197 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 PTPRDP23468 1912 aa1.36□□□□□ -2.19
USP53-204ENST00000507906 FANCMQ8IYD8 2048 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 TNS3Q68CZ2 1445 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 PRORSD1PA6NEY8 169 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 GABARAPH6UMI1 98 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 CFDP00746 253 aaPredicted RBP1.35□□□□□ -2.19
USP53-204ENST00000507906 S100A8P05109 93 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 RPL7P18124 248 aaKnown RBP1.35□□□□□ -2.19
USP53-204ENST00000507906 RPS3P23396 243 aaKnown RBP eCLIP1.35□□□□□ -2.19
USP53-204ENST00000507906 NCS1P62166 190 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 FAM74A1Q5RGS3 127 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 PHF5AQ7RTV0 110 aaKnown RBP1.35□□□□□ -2.19
USP53-204ENST00000507906 TAC4Q86UU9 113 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 CTAGE3PQ8IX95 158 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 C12orf29Q8N999 325 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 ST6GALNAC3Q8NDV1 305 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 OR4K15Q8NH41 348 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 Q8TAT8 98 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 C14orf144Q96I85 54 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 HYLS1Q96M11 299 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 C2orf88Q9BSF0 95 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 GGACTQ9BVM4 153 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 CYSTM1Q9H1C7 97 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 C19orf12Q9NSK7 152 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 HSPB11Q9Y547 144 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 V9GYH0 126 aa1.35□□□□□ -2.19
USP53-204ENST00000507906 KIAA1549Q9HCM3 1950 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 FREM1Q5H8C1 2179 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 GNG14A0A1W2PPG7 69 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 CD2P06729 351 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 NMBP08949 121 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 LYNX1P0DP58 116 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 RRAS2P62070 204 aaPredicted RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 LSM3P62310 102 aaKnown RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 HBBP68871 147 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 PLCXD2Q0VAA5 305 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 KLRD1Q13241 179 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 TMEM14EPQ6UXP3 125 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 C8orf59Q8N0T1 100 aaPredicted RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 OR5D16Q8NGK9 328 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 CHCHD1Q96BP2 118 aaKnown RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 PPP3R2Q96LZ3 170 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 ZNF714Q96N38 554 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 EFCAB11Q9BUY7 163 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 CACYBPQ9HB71 228 aaKnown RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 NIT2Q9NQR4 276 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 COPZ2Q9P299 210 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 METTL1Q9UBP6 276 aaKnown RBP1.34□□□□□ -2.19
USP53-204ENST00000507906 NUBP2Q9Y5Y2 271 aa1.34□□□□□ -2.19
USP53-204ENST00000507906 MED12LQ86YW9 2145 aa1.34□□□□□ -2.2
USP53-204ENST00000507906 KCPQ6ZWJ8 1503 aa1.34□□□□□ -2.2
USP53-204ENST00000507906 SDK1Q7Z5N4 2213 aa1.34□□□□□ -2.2
USP53-204ENST00000507906 KIAA1549LQ6ZVL6 1849 aa1.33□□□□□ -2.2
USP53-204ENST00000507906 IGKV3D-7A0A0C4DH55 119 aa1.33□□□□□ -2.2
USP53-204ENST00000507906 IGKV3OR2-268A0A0C4DH90 116 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms