RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 HYLS1Q96M11 299 aa14.22□□□□□ -0.13
SQSTM1-210ENST00000506042 TM2D2Q9BX73 214 aa14.22□□□□□ -0.13
SQSTM1-210ENST00000506042 OTORQ9NRC9 128 aa14.22□□□□□ -0.13
SQSTM1-210ENST00000506042 FUSP35637 526 aaKnown RBP eCLIP14.21□□□□□ -0.13
SQSTM1-210ENST00000506042 LRRC37A5PQ49AS3 106 aa14.21□□□□□ -0.13
SQSTM1-210ENST00000506042 LINC01556Q5JQF7 62 aa14.21□□□□□ -0.13
SQSTM1-210ENST00000506042 A0A1W2PPV4 95 aa14.2□□□□□ -0.14
SQSTM1-210ENST00000506042 K7EQM0 130 aa14.2□□□□□ -0.14
SQSTM1-210ENST00000506042 RHOHQ15669 191 aa14.2□□□□□ -0.14
SQSTM1-210ENST00000506042 PQLC2Q6ZP29 291 aa14.2□□□□□ -0.14
SQSTM1-210ENST00000506042 RPH3ALQ9UNE2 315 aa14.2□□□□□ -0.14
SQSTM1-210ENST00000506042 SERTM2A0A1B0GWG4 89 aa14.19□□□□□ -0.14
SQSTM1-210ENST00000506042 S100ZQ8WXG8 99 aa14.19□□□□□ -0.14
SQSTM1-210ENST00000506042 ASB13Q8WXK3 278 aa14.19□□□□□ -0.14
SQSTM1-210ENST00000506042 TREM1Q9NP99 234 aa14.19□□□□□ -0.14
SQSTM1-210ENST00000506042 PGPA6NDG6 321 aa14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 IBA57-AS1B1ANH7 110 aa14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 J3QL48 77 aa14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 SMR3BP02814 79 aaPredicted RBP14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 ACOT6Q3I5F7 207 aaPredicted RBP14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 Q6ZQT7 251 aa14.18□□□□□ -0.14
SQSTM1-210ENST00000506042 C1QBP02746 253 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 PLA2G1BP04054 148 aaKnown RBP14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 GATA1P15976 413 aaPredicted RBP14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 LAGE3Q14657 143 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 ZFP69Q49AA0 526 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 TOR2AQ5JU69 321 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 LINC00299Q6ZSB3 139 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 MBD2Q9UBB5 411 aa14.17□□□□□ -0.14
SQSTM1-210ENST00000506042 DMBT1Q9UGM3 2413 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 IGHV3-16A0A0C4DH30 117 aa14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 TRBV6-4A0A1B0GX49 114 aa14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 Q8N814 137 aa14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 Q9HAA7 133 aa14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 OR5AC2Q9NZP5 309 aa14.16□□□□□ -0.14
SQSTM1-210ENST00000506042 ASAH1Q13510 395 aa14.15□□□□□ -0.14
SQSTM1-210ENST00000506042 ZNF876PQ49A33 203 aa14.15□□□□□ -0.14
SQSTM1-210ENST00000506042 GOLT1AQ6ZVE7 132 aa14.15□□□□□ -0.14
SQSTM1-210ENST00000506042 SEC11BP0C7V7 166 aa14.14□□□□□ -0.15
SQSTM1-210ENST00000506042 MGST1P10620 155 aaKnown RBP14.14□□□□□ -0.15
SQSTM1-210ENST00000506042 LELP1Q5T871 98 aa14.14□□□□□ -0.15
SQSTM1-210ENST00000506042 HSPB11Q9Y547 144 aa14.14□□□□□ -0.15
SQSTM1-210ENST00000506042 COX11Q9Y6N1 276 aa14.14□□□□□ -0.15
SQSTM1-210ENST00000506042 TRAV8-3A0A0A6YYJ7 113 aa14.13□□□□□ -0.15
SQSTM1-210ENST00000506042 TAAR5O14804 337 aa14.13□□□□□ -0.15
SQSTM1-210ENST00000506042 GNRH2O43555 120 aa14.13□□□□□ -0.15
SQSTM1-210ENST00000506042 TYMSP04818 313 aa14.13□□□□□ -0.15
SQSTM1-210ENST00000506042 APOBP04114 4563 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-210ENST00000506042 DNAH5Q8TE73 4624 aa14.12□□□□□ -0.15
SQSTM1-210ENST00000506042 SIX6O95475 246 aa14.12□□□□□ -0.15
SQSTM1-210ENST00000506042 ATP6V0E2Q8NHE4 81 aa14.12□□□□□ -0.15
SQSTM1-210ENST00000506042 PPP1R1CQ8WVI7 109 aa14.12□□□□□ -0.15
SQSTM1-210ENST00000506042 LRCOL1A6NCL2 159 aa14.11□□□□□ -0.15
SQSTM1-210ENST00000506042 SLC25A29Q8N8R3 303 aa14.11□□□□□ -0.15
SQSTM1-210ENST00000506042 RMI2Q96E14 147 aa14.11□□□□□ -0.15
SQSTM1-210ENST00000506042 GTSF1LQ9H1H1 148 aa14.11□□□□□ -0.15
SQSTM1-210ENST00000506042 LOC100131303A0A0U1RQF7 123 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 F6UZH7 168 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 SSNA1O43805 119 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 IGHV3-30P01768 117 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 IGHV3-33P01772 117 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 IGHV3-30-3P0DP02 117 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 IGHV3-30-5P0DP03 117 aa14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 RPL12P30050 165 aaKnown RBP14.1□□□□□ -0.15
SQSTM1-210ENST00000506042 A0A087WWC5 75 aa14.09□□□□□ -0.15
SQSTM1-210ENST00000506042 URGCP-MRPS24S4R325 110 aa14.09□□□□□ -0.15
SQSTM1-210ENST00000506042 RS1O15537 224 aa14.08□□□□□ -0.16
SQSTM1-210ENST00000506042 CFAP126Q5VTH2 177 aa14.08□□□□□ -0.16
SQSTM1-210ENST00000506042 C5orf17Q8NAS9 161 aa14.08□□□□□ -0.16
SQSTM1-210ENST00000506042 PTH2Q96A98 100 aa14.08□□□□□ -0.16
SQSTM1-210ENST00000506042 GGTLC3B5MD39 225 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 INMT-MINDY4F8WBC2 141 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 MPC2O95563 127 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 SMUG1Q53HV7 270 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 OR10G9Q8NGN4 311 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 OR10G7Q8NGN6 311 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 SMIM3Q9BZL3 60 aa14.07□□□□□ -0.16
SQSTM1-210ENST00000506042 A8MWV9 139 aa14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 H0YIZ8 118 aa14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 S100A4P26447 101 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 FGF8P55075 233 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 SAPCD1Q5SSQ6 148 aa14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 DEFB104AQ8WTQ1 72 aa14.06□□□□□ -0.16
SQSTM1-210ENST00000506042 TRAV8-1A0A0A6YYK1 113 aa14.05□□□□□ -0.16
SQSTM1-210ENST00000506042 GCGP01275 180 aa14.05□□□□□ -0.16
SQSTM1-210ENST00000506042 KCNIP4Q6PIL6 250 aa14.05□□□□□ -0.16
SQSTM1-210ENST00000506042 MBP02144 154 aa14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 CDC34P49427 236 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 DEFA1P59665 94 aa14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 DEFA3P59666 94 aa14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 PIK3CD-AS1Q5SR53 167 aa14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 ZFP2Q6ZN57 461 aa14.04□□□□□ -0.16
SQSTM1-210ENST00000506042 IGHV3-73A0A0B4J1V6 119 aa14.03□□□□□ -0.16
SQSTM1-210ENST00000506042 UPK1BO75841 260 aa14.03□□□□□ -0.16
SQSTM1-210ENST00000506042 HAMPP81172 84 aa14.03□□□□□ -0.16
SQSTM1-210ENST00000506042 TMEM167BQ9NRX6 74 aa14.03□□□□□ -0.16
SQSTM1-210ENST00000506042 TCRAP04437 139 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 ARL14EPLP0DKL9 152 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 H2BFSP57053 126 aa14.02□□□□□ -0.17
SQSTM1-210ENST00000506042 FLI1Q01543 452 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms