RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 AIF1LQ9BQI0 150 aa0.72□□□□□ -2.29
SMC4-225ENST00000497203 ASH1LQ9NR48 2969 aaKnown RBP0.72□□□□□ -2.29
SMC4-225ENST00000497203 ARAP1Q96P48 1450 aa0.72□□□□□ -2.29
SMC4-225ENST00000497203 DBIP07108 87 aaKnown RBP0.71□□□□□ -2.3
SMC4-225ENST00000497203 SDC4P31431 198 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 SPINK13Q1W4C9 94 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 C6orf52Q5T4I8 152 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 LYPD5Q6UWN5 251 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 AKAP14Q86UN6 197 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 TCTE3Q8IZS6 198 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 OR4S1Q8NGB4 309 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 COMMD3Q9UBI1 195 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 UNC13AQ9UPW8 1703 aa0.71□□□□□ -2.3
SMC4-225ENST00000497203 SPAG17Q6Q759 2223 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 ANKRD30AQ9BXX3 1397 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 SMIM24O75264 130 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 TNFSF15O95150 251 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 ADCYAP1P18509 176 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 KDELR1P24390 212 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 CMPK1P30085 196 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 PLGLB1Q02325 96 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 Q5XG85 94 aa0.7□□□□□ -2.3
SMC4-225ENST00000497203 BCORL1Q5H9F3 1711 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 WDR97A6NE52 1622 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 C9JAW5 83 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 SCGB1A1P11684 91 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 IL7P13232 177 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 FXYD3Q14802 87 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 GLYATL3Q5SZD4 288 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 TMEM244Q5VVB8 128 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 UNQ5815/PRO19632Q6UWF5 114 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 TMEM91Q6ZNR0 172 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 SLC35B3Q9H1N7 401 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 ATG5Q9H1Y0 275 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 HIGD1AQ9Y241 93 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 PTPRGP23470 1445 aa0.69□□□□□ -2.3
SMC4-225ENST00000497203 HELZP42694 1942 aaKnown RBP0.69□□□□□ -2.3
SMC4-225ENST00000497203 OR2H2O95918 312 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 IGKCP01834 107 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 MT-ND4LP03901 98 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 POLR2JP52435 117 aaKnown RBP0.68□□□□□ -2.3
SMC4-225ENST00000497203 LINC00208Q96KT6 92 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 BANF2Q9H503 90 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 KIDINS220Q9ULH0 1771 aa0.68□□□□□ -2.3
SMC4-225ENST00000497203 TENM3Q9P273 2699 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 ARHGAP31Q2M1Z3 1444 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 AFDNP55196 1824 aaKnown RBP0.67□□□□□ -2.3
SMC4-225ENST00000497203 NBDYA0A0U1RRE5 68 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 LOC101927531A0A1B0GV80 90 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 YPEL1O60688 119 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 HLA-DRB4P13762 266 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 C5orf56Q8N8D9 126 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 VPS25Q9BRG1 176 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 HLA-DRB4X5D2U9 266 aa0.67□□□□□ -2.3
SMC4-225ENST00000497203 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
SMC4-225ENST00000497203 TRAV2A0A0B4J234 112 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 CD3DP04234 171 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 SPINK7P58062 85 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 PPDPFLQ8WWR9 84 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 TAS2R8Q9NYW2 309 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 KDM5CP41229 1560 aa0.66□□□□□ -2.3
SMC4-225ENST00000497203 TRBV10-1A0A0K0K1A3 114 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 A0A1B0GW64 132 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 FXYD1O00168 92 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 RBP4P02753 201 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 IQCJQ1A5X6 159 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 MORN2Q502X0 79 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 PLAC8Q9NZF1 115 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 DNAJC15Q9Y5T4 150 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 CDK12Q9NYV4 1490 aaPredicted RBP0.65□□□□□ -2.31
SMC4-225ENST00000497203 LOC285556D6RIA3 1793 aa0.65□□□□□ -2.31
SMC4-225ENST00000497203 APOC1P02654 83 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 CCKP06307 115 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 AKR1D1P51857 326 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 ZNF56Q15929 161 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 SLC25A26Q70HW3 274 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 ESPL1Q14674 2120 aa0.64□□□□□ -2.31
SMC4-225ENST00000497203 DLEC1Q9Y238 1755 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 UHRF1BP1LA0JNW5 1464 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 ZCCHC6Q5VYS8 1495 aaKnown RBP0.63□□□□□ -2.31
SMC4-225ENST00000497203 TRAV17A0A0B4J275 112 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 LY6G6CO95867 125 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 RPL37P61927 97 aaKnown RBP0.63□□□□□ -2.31
SMC4-225ENST00000497203 KLKP1Q107X0 134 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 BATF3Q9NR55 127 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 LRP5O75197 1615 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 KCPQ6ZWJ8 1503 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 CCDC171Q6TFL3 1326 aa0.63□□□□□ -2.31
SMC4-225ENST00000497203 TEX49A0A1B0GTD5 131 aa0.62□□□□□ -2.31
SMC4-225ENST00000497203 ATP6V0E2Q8NHE4 81 aa0.62□□□□□ -2.31
SMC4-225ENST00000497203 PPP1R1CQ8WVI7 109 aa0.62□□□□□ -2.31
SMC4-225ENST00000497203 SNX29P2Q8IUI4 249 aa0.61□□□□□ -2.31
SMC4-225ENST00000497203 MMGT1Q8N4V1 131 aa0.61□□□□□ -2.31
SMC4-225ENST00000497203 FAM103A1Q9BTL3 118 aaKnown RBP0.61□□□□□ -2.31
SMC4-225ENST00000497203 TMEM14BQ9NUH8 114 aa0.61□□□□□ -2.31
SMC4-225ENST00000497203 NOP16Q9Y3C1 178 aaKnown RBP0.61□□□□□ -2.31
SMC4-225ENST00000497203 RREB1Q92766 1687 aa0.61□□□□□ -2.31
SMC4-225ENST00000497203 BLMP54132 1417 aaPredicted RBP0.61□□□□□ -2.31
SMC4-225ENST00000497203 NAV3Q8IVL0 2385 aa0.61□□□□□ -2.31
SMC4-225ENST00000497203 APCP25054 2843 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms