RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TRAV12-3A0A0B4J271 114 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 H3BVH4 76 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 M0R2Z0 102 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 OR5AL1P0C617 328 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HLA-DRB4P13762 266 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 COX8CQ7Z4L0 72 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 SMR3AQ99954 134 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HLA-DRB4X5D2U9 266 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 PTPN13Q12923 2485 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 M0R381 172 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 SCGB1D1O95968 90 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 SHISA2Q6UWI4 295 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 TMEM61Q8N0U2 210 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 SPXQ9BT56 116 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 DPH3P1Q9H4G8 78 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 HTN1P15515 57 aa6.33□□□□□ -1.4
USP54-215ENST00000497106 CHCHD1Q96BP2 118 aaKnown RBP6.33□□□□□ -1.4
USP54-215ENST00000497106 PRAC2D3DTV9 90 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 APOC4P55056 127 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 SCGB1A1P11684 91 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 PROK1P58294 105 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 MRAP2Q96G30 205 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 NXT2Q9NPJ8 142 aaKnown RBP6.32□□□□□ -1.4
USP54-215ENST00000497106 CCL25O15444 150 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 IGLV2-11P01706 119 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 TMEM191AQ9H0A3 160 aa6.32□□□□□ -1.4
USP54-215ENST00000497106 FOXA3P55318 350 aaPredicted RBP6.31□□□□□ -1.4
USP54-215ENST00000497106 ODF1Q14990 250 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 MIEN1Q9BRT3 115 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 MAP6D1Q9H9H5 199 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 IGSF10Q6WRI0 2623 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 KIR2DL5BA0A0G2JN68 375 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 KIR2DL5BA0A0G2JPC4 375 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 KNCNA6PVL3 124 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 CTRLP40313 264 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 Q0VG73 95 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 SLAQ13239 276 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 SPINK13Q1W4C9 94 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 ANXA2RQ3ZCQ2 193 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 GFI1BQ5VTD9 330 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 KIR2DL5AQ8N109 375 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 OR10AG1Q8NH19 301 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 DCANP1Q8TF63 244 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 WDFY4Q6ZS81 3184 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 RHODO00212 210 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 ARMS2P0C7Q2 107 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 ZNF56Q15929 161 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 RCHY1Q96PM5 261 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 DMXL1Q9Y485 3027 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 PLXNB1O43157 2135 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 IGHV3OR16-12A0A075B7B8 117 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 H0Y8G0 127 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 OCIAD2Q56VL3 154 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 MAP1LC3CQ9BXW4 147 aa6.31□□□□□ -1.4
USP54-215ENST00000497106 LOC102724200A0A096LPH7 203 aaPredicted RBP6.3□□□□□ -1.4
USP54-215ENST00000497106 SOCS3O14543 225 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 ANKRD17O75179 2603 aaKnown RBP6.3□□□□□ -1.4
USP54-215ENST00000497106 USP9XQ93008 2570 aaPredicted RBP6.3□□□□□ -1.4
USP54-215ENST00000497106 CSPG4Q6UVK1 2322 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 FCER1GP30273 86 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.3□□□□□ -1.4
USP54-215ENST00000497106 FAM110AQ9BQ89 295 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 AP5S1Q9NUS5 200 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 PRRC2CQ9Y520 2896 aaKnown RBP6.3□□□□□ -1.4
USP54-215ENST00000497106 FHL3Q13643 280 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 KIAA1644Q3SXP7 199 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 FAM104BQ5XKR9 115 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 C20orf173Q96LM9 149 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 KIR2DL4Q99706 377 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 F6UB75 175 aa6.3□□□□□ -1.4
USP54-215ENST00000497106 A8MWV9 139 aa6.29□□□□□ -1.4
USP54-215ENST00000497106 ZNF493Q6ZR52 646 aa6.29□□□□□ -1.4
USP54-215ENST00000497106 KRTDAPP60985 99 aa6.29□□□□□ -1.4
USP54-215ENST00000497106 SELENOKQ9Y6D0 94 aa6.29□□□□□ -1.4
USP54-215ENST00000497106 SSBP4Q9BWG4 385 aaPredicted RBP6.29□□□□□ -1.4
USP54-215ENST00000497106 C18orf65Q6ZTR6 163 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 ZNF479Q96JC4 524 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 ST20Q9HBF5 79 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 H3BMM0 161 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 YPEL4Q96NS1 127 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 RPL35AP18077 110 aaKnown RBP6.28□□□□□ -1.4
USP54-215ENST00000497106 ORMDL2Q53FV1 153 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 CST9LQ9H4G1 147 aa6.28□□□□□ -1.4
USP54-215ENST00000497106 LEPROTL1O95214 131 aa6.27□□□□□ -1.4
USP54-215ENST00000497106 PAPPA-AS1Q5QFB9 102 aa6.27□□□□□ -1.4
USP54-215ENST00000497106 FAM74A4Q5TZK3 123 aa6.27□□□□□ -1.4
USP54-215ENST00000497106 PET117Q6UWS5 81 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 ZFAND2AQ8N6M9 145 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 TNFRSF18Q9Y5U5 241 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 FRYLO94915 3013 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 USP9YO00507 2555 aaPredicted RBP6.27□□□□□ -1.41
USP54-215ENST00000497106 ATP5LO75964 103 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 IGLC6P0CF74 106 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 MTURNQ8N3F0 131 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 LOC389332A0A1B0GUA5 103 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 A0A1B0GXF2 115 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 KLLNB2CW77 178 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 M0R2P5 195 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 IGLV1-51P01701 117 aa6.27□□□□□ -1.41
USP54-215ENST00000497106 FXYD7P58549 80 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms