RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CYB561D1Q8N8Q1 229 aa12.58□□□□□ -0.4
COL9A3-214ENST00000490398 TMEM75Q8N9X5 138 aa12.58□□□□□ -0.4
COL9A3-214ENST00000490398 ATG101Q9BSB4 218 aa12.58□□□□□ -0.4
COL9A3-214ENST00000490398 SERTM2A0A1B0GWG4 89 aa12.57□□□□□ -0.4
COL9A3-214ENST00000490398 BCL2L11O43521 198 aa12.57□□□□□ -0.4
COL9A3-214ENST00000490398 ZNF471Q9BX82 626 aaPredicted RBP12.57□□□□□ -0.4
COL9A3-214ENST00000490398 TRGV11A0A075B6L2 103 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 GCGP01275 180 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 SFTA3P0C7M3 94 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 FHL2Q14192 279 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 ESRGQ1W209 222 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 TMUB2Q71RG4 321 aa12.56□□□□□ -0.4
COL9A3-214ENST00000490398 A0A096LPF7 62 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 A0A0D9SG52 128 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 A0A1B0GV50 99 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 IFNA7P01567 189 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 ZNF479Q96JC4 524 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 RYR1P21817 5038 aa12.55□□□□□ -0.4
COL9A3-214ENST00000490398 KANTRA0A1W2PQU2 76 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 K7EQM0 130 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 PEX7O00628 323 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 SEC11BP0C7V7 166 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 Q6ZNX1 250 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 FAM213BQ8TBF2 198 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 RASL10AQ92737 203 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 NDFIP1Q9BT67 221 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 MUC4Q99102 2169 aa12.54□□□□□ -0.4
COL9A3-214ENST00000490398 H3BNG1 76 aa12.53□□□□□ -0.4
COL9A3-214ENST00000490398 CCL18P55774 89 aa12.53□□□□□ -0.4
COL9A3-214ENST00000490398 SPXQ9BT56 116 aa12.53□□□□□ -0.4
COL9A3-214ENST00000490398 SDF2L1Q9HCN8 221 aa12.53□□□□□ -0.4
COL9A3-214ENST00000490398 ARL2-SNX15V9GYD0 113 aa12.53□□□□□ -0.4
COL9A3-214ENST00000490398 CRYBA4P53673 196 aa12.52□□□□□ -0.41
COL9A3-214ENST00000490398 FAM3BP58499 235 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-214ENST00000490398 LGALSLQ3ZCW2 172 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-214ENST00000490398 SMUG1Q53HV7 270 aa12.52□□□□□ -0.41
COL9A3-214ENST00000490398 Q86TA4 180 aa12.52□□□□□ -0.41
COL9A3-214ENST00000490398 MBD3L1Q8WWY6 194 aa12.52□□□□□ -0.41
COL9A3-214ENST00000490398 A0A1B0GVY2 172 aa12.51□□□□□ -0.41
COL9A3-214ENST00000490398 PAX4O43316 350 aa12.51□□□□□ -0.41
COL9A3-214ENST00000490398 PFN1P07737 140 aaKnown RBP12.51□□□□□ -0.41
COL9A3-214ENST00000490398 CRIP1P50238 77 aa12.51□□□□□ -0.41
COL9A3-214ENST00000490398 SFT2D1Q8WV19 159 aa12.51□□□□□ -0.41
COL9A3-214ENST00000490398 HHLA3Q9XRX5 114 aa12.51□□□□□ -0.41
COL9A3-214ENST00000490398 APOBP04114 4563 aaKnown RBP12.5□□□□□ -0.41
COL9A3-214ENST00000490398 IGKV3D-20A0A0C4DH25 116 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 NBDYA0A0U1RRE5 68 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 M0R2P5 195 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 PAGE4O60829 102 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 PFDN1O60925 122 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 CST9LP1Q5W188 147 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 DPPA3Q6W0C5 159 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 TCTE3Q8IZS6 198 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 KCNS1Q96KK3 526 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 KRTAP1-5Q9BYS1 174 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 PRO0255Q9UI72 69 aa12.5□□□□□ -0.41
COL9A3-214ENST00000490398 PRSS29PA6NIE9 313 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 SAPCD1Q5SSQ6 148 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 LINC00336Q6ZUF6 198 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 STOML3Q8TAV4 291 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 HIST1H2BAQ96A08 127 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 ZC2HC1AQ96GY0 325 aa12.49□□□□□ -0.41
COL9A3-214ENST00000490398 hCG_2014768A0A024R1R8 64 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 FBLL1A6NHQ2 334 aaKnown RBP12.48□□□□□ -0.41
COL9A3-214ENST00000490398 UMAD1C9J7I0 102 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 C9JCJ5 164 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 RNASE3P12724 160 aaKnown RBP12.48□□□□□ -0.41
COL9A3-214ENST00000490398 CCL20P78556 96 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 ZFP69Q49AA0 526 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 C9orf85Q96MD7 179 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 NKX6-2Q9C056 277 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-214ENST00000490398 Q9H8V8 135 aa12.48□□□□□ -0.41
COL9A3-214ENST00000490398 MRPS16Q9Y3D3 137 aaKnown RBP12.48□□□□□ -0.41
COL9A3-214ENST00000490398 TRAV4A0A0B4J268 109 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 TRGV4A0A0C4DH28 118 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 LOC100131303A0A0U1RQF7 123 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 PGPEP1LA6NFU8 196 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 TPT1P13693 172 aaKnown RBP12.47□□□□□ -0.41
COL9A3-214ENST00000490398 PPT1P50897 306 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 ZNF575Q86XF7 245 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 OR4C5Q8NGB2 326 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 HSPG2P98160 4391 aa12.47□□□□□ -0.41
COL9A3-214ENST00000490398 H2AFB1P0C5Y9 115 aa12.46□□□□□ -0.41
COL9A3-214ENST00000490398 C1orf134Q5TEV5 83 aa12.46□□□□□ -0.41
COL9A3-214ENST00000490398 UPK3BQ9BT76 320 aa12.46□□□□□ -0.41
COL9A3-214ENST00000490398 ICOSQ9Y6W8 199 aa12.46□□□□□ -0.41
COL9A3-214ENST00000490398 ZNF876PQ49A33 203 aa12.45□□□□□ -0.42
COL9A3-214ENST00000490398 SCO2A0A1W2PP80 73 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 FABP5P3A8MUU1 101 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 K7EQD1 137 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 SH2D1AO60880 128 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 C1QBP02746 253 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 GYPEP15421 78 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 EIF5AP63241 154 aaKnown RBP12.44□□□□□ -0.42
COL9A3-214ENST00000490398 SLAQ13239 276 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 CFAP126Q5VTH2 177 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 LYPD5Q6UWN5 251 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 COX8CQ7Z4L0 72 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 NHLRC2Q8NBF2 726 aa12.44□□□□□ -0.42
COL9A3-214ENST00000490398 FMC1Q96HJ9 113 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms