RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 GCGP01275 180 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 IFNA7P01567 189 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 SEC11BP0C7V7 166 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 LGALS9BQ3B8N2 356 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 ZNF479Q96JC4 524 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 NDFIP1Q9BT67 221 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 ARL2-SNX15V9GYD0 113 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 DNAH10Q8IVF4 4471 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 BIRC6Q9NR09 4857 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 hCG_2014768A0A024R1R8 64 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 A0A096LPF7 62 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 K7EQM0 130 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 FHL2Q14192 279 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 ESRGQ1W209 222 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 LGALSLQ3ZCW2 172 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-226ENST00000488376 Q86TA4 180 aa9.63□□□□□ -0.87
SYNE1-226ENST00000488376 PFDN1O60925 122 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 TCTE3Q8IZS6 198 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 SFT2D1Q8WV19 159 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 RASL10AQ92737 203 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 SPXQ9BT56 116 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 SDF2L1Q9HCN8 221 aa9.62□□□□□ -0.87
SYNE1-226ENST00000488376 H3BNG1 76 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 PAGE4O60829 102 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 PFN1P07737 140 aaKnown RBP9.61□□□□□ -0.87
SYNE1-226ENST00000488376 CCL18P55774 89 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 SMUG1Q53HV7 270 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 CST9LP1Q5W188 147 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 MBD3L1Q8WWY6 194 aa9.61□□□□□ -0.87
SYNE1-226ENST00000488376 UMAD1C9J7I0 102 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 M0R2P5 195 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 PAX4O43316 350 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 CRIP1P50238 77 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 CRYBA4P53673 196 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 FAM3BP58499 235 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-226ENST00000488376 DPPA3Q6W0C5 159 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 STOML3Q8TAV4 291 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 ZC2HC1AQ96GY0 325 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 KRTAP1-5Q9BYS1 174 aa9.6□□□□□ -0.87
SYNE1-226ENST00000488376 IGKV3D-20A0A0C4DH25 116 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 NBDYA0A0U1RRE5 68 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 RNASE3P12724 160 aaKnown RBP9.59□□□□□ -0.87
SYNE1-226ENST00000488376 TPT1P13693 172 aaKnown RBP9.59□□□□□ -0.87
SYNE1-226ENST00000488376 CCL20P78556 96 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 ZFP69Q49AA0 526 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 SAPCD1Q5SSQ6 148 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 HIST1H2BAQ96A08 127 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 KCNS1Q96KK3 526 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 C9orf85Q96MD7 179 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 PRO0255Q9UI72 69 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 HHLA3Q9XRX5 114 aa9.59□□□□□ -0.87
SYNE1-226ENST00000488376 TRGV4A0A0C4DH28 118 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 LOC100131303A0A0U1RQF7 123 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 A0A1B0GVY2 172 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 C9JCJ5 164 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 NHLRC2Q8NBF2 726 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 NKX6-2Q9C056 277 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-226ENST00000488376 HECTD4Q9Y4D8 3996 aa9.58□□□□□ -0.88
SYNE1-226ENST00000488376 DNAH2Q9P225 4427 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 TRAV4A0A0B4J268 109 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 SCO2A0A1W2PP80 73 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 PGPEP1LA6NFU8 196 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 FBLL1A6NHQ2 334 aaKnown RBP9.57□□□□□ -0.88
SYNE1-226ENST00000488376 PRSS29PA6NIE9 313 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 C1QBP02746 253 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 H2AFB1P0C5Y9 115 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 PPT1P50897 306 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 ZNF575Q86XF7 245 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 FMC1Q96HJ9 113 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 Q9H8V8 135 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 MRPS16Q9Y3D3 137 aaKnown RBP9.57□□□□□ -0.88
SYNE1-226ENST00000488376 ICOSQ9Y6W8 199 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 MUC4Q99102 2169 aa9.57□□□□□ -0.88
SYNE1-226ENST00000488376 A0A1B0GVG6 124 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 M0R036 132 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 SH2D1AO60880 128 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 LTAP01374 205 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 EIF5AP63241 154 aaKnown RBP9.56□□□□□ -0.88
SYNE1-226ENST00000488376 ZNF876PQ49A33 203 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 ZNF506Q5JVG8 444 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 C1orf134Q5TEV5 83 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 LINC00336Q6ZUF6 198 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 OR4C5Q8NGB2 326 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 UPK3BQ9BT76 320 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 FAT2Q9NYQ8 4349 aa9.56□□□□□ -0.88
SYNE1-226ENST00000488376 IGHV3-73A0A0B4J1V6 119 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 FABP5P3A8MUU1 101 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 K7EQD1 137 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 GYPEP15421 78 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 AKR1C3P42330 323 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 UBE2G1P62253 170 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 CFAP126Q5VTH2 177 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 COX8CQ7Z4L0 72 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 AKAP14Q86UN6 197 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 C9orf62Q8N4C0 152 aa9.55□□□□□ -0.88
SYNE1-226ENST00000488376 TRBV6-1A0A0K0K1D8 114 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 GRIFINA4D1Z8 144 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 KRBOX1C9JBD0 128 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 ORM1P02763 201 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 TCEAL7Q9BRU2 100 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms