RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ARL2-SNX15V9GYD0 113 aa10.41□□□□□ -0.74
USP4-212ENST00000486549 TRGV2A0A075B6R0 118 aa10.4□□□□□ -0.74
USP4-212ENST00000486549 AKR1C3P42330 323 aa10.4□□□□□ -0.74
USP4-212ENST00000486549 SAPCD1Q5SSQ6 148 aa10.4□□□□□ -0.74
USP4-212ENST00000486549 FAM210BQ96KR6 192 aa10.4□□□□□ -0.74
USP4-212ENST00000486549 GNRH2O43555 120 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 SPINK4O60575 86 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 CCL20P78556 96 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 OR5I1Q13606 314 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 FMC1Q96HJ9 113 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 SDF2L1Q9HCN8 221 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 GNG13Q9P2W3 67 aa10.39□□□□□ -0.75
USP4-212ENST00000486549 SCO2A0A1W2PP80 73 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 TEX46H3BTG2 121 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 TYMSP04818 313 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 PFN1P07737 140 aaKnown RBP10.38□□□□□ -0.75
USP4-212ENST00000486549 TDRG1Q3Y452 100 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 KCNS1Q96KK3 526 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 TCEAL7Q9BRU2 100 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 C11orf21Q9P2W6 132 aa10.38□□□□□ -0.75
USP4-212ENST00000486549 VPS13DQ5THJ4 4388 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 TRAV1-1A0A0B4J248 108 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 IGHV3-16A0A0C4DH30 117 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 HOXA5P20719 270 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 ALKAL2Q6UX46 152 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 MANBALQ9NQG1 85 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 BOLA1Q9Y3E2 137 aa10.37□□□□□ -0.75
USP4-212ENST00000486549 A0A0J9YY99 117 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 NUDT3O95989 172 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 IGHV3-53P01767 116 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 P0DMU3 169 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 FAM231AP0DMU4 169 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 FAM231CP0DMU5 169 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 LGALS9BQ3B8N2 356 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 UBE2DNLQ8IWF7 75 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 C15orf53Q8NAA6 179 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 ZC2HC1AQ96GY0 325 aa10.36□□□□□ -0.75
USP4-212ENST00000486549 TRAV26-1A0A087WT03 109 aa10.35□□□□□ -0.75
USP4-212ENST00000486549 NHLRC2Q8NBF2 726 aa10.35□□□□□ -0.75
USP4-212ENST00000486549 SPXQ9BT56 116 aa10.35□□□□□ -0.75
USP4-212ENST00000486549 ZFP30Q9Y2G7 519 aa10.35□□□□□ -0.75
USP4-212ENST00000486549 MUC4Q99102 2169 aa10.34□□□□□ -0.75
USP4-212ENST00000486549 LTAP01374 205 aa10.34□□□□□ -0.75
USP4-212ENST00000486549 IFNA1P01562 189 aa10.34□□□□□ -0.75
USP4-212ENST00000486549 C18orf15Q96N68 181 aa10.34□□□□□ -0.75
USP4-212ENST00000486549 TRBV6-1A0A0K0K1D8 114 aa10.33□□□□□ -0.76
USP4-212ENST00000486549 FABP5P3A8MUU1 101 aa10.33□□□□□ -0.76
USP4-212ENST00000486549 SH2D1AO60880 128 aa10.33□□□□□ -0.76
USP4-212ENST00000486549 M0R036 132 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 M0R2P5 195 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 ORM1P02763 201 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 S100A9P06702 114 aaKnown RBP10.32□□□□□ -0.76
USP4-212ENST00000486549 SFTA3P0C7M3 94 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 CRIP1P50238 77 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 POM121L12Q8N7R1 296 aa10.32□□□□□ -0.76
USP4-212ENST00000486549 KMT2AQ03164 3969 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 IGKV3D-20A0A0C4DH25 116 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 B4DEV8 164 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 C9JCJ5 164 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 BCL2P10415 239 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 S100A4P26447 101 aaKnown RBP10.31□□□□□ -0.76
USP4-212ENST00000486549 FAM162BQ5T6X4 162 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 COX8CQ7Z4L0 72 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 BAGE2Q86Y30 109 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 RASL10AQ92737 203 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 DERL1Q9BUN8 251 aa10.31□□□□□ -0.76
USP4-212ENST00000486549 TMSB15BA0A087X1C1 80 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 TRGV4A0A0C4DH28 118 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 RNASE3P12724 160 aaKnown RBP10.3□□□□□ -0.76
USP4-212ENST00000486549 ASIPP42127 132 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 RPL35P42766 123 aaKnown RBP10.3□□□□□ -0.76
USP4-212ENST00000486549 BLOC1S1P78537 153 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 MEF2BQ02080 365 aaPredicted RBP10.3□□□□□ -0.76
USP4-212ENST00000486549 C11orf52Q96A22 123 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 ZNF479Q96JC4 524 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 C9orf85Q96MD7 179 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 TXNDC17Q9BRA2 123 aa10.3□□□□□ -0.76
USP4-212ENST00000486549 NACAE9PAV3 2078 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 DNAH6Q9C0G6 4158 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 GRIFINA4D1Z8 144 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 FHL2Q14192 279 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 ZNF674Q2M3X9 581 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 ZNF876PQ49A33 203 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 PRR27Q6MZM9 219 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 OR4C5Q8NGB2 326 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 VSIG2Q96IQ7 327 aa10.29□□□□□ -0.76
USP4-212ENST00000486549 TRAV4A0A0B4J268 109 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 KRBOX1C9JBD0 128 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 H3BVH4 76 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 PAX4O43316 350 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 PDE6DO43924 150 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 RNF212Q495C1 297 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 MED9Q9NWA0 146 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 VAX2Q9UIW0 290 aa10.28□□□□□ -0.76
USP4-212ENST00000486549 PGPEP1LA6NFU8 196 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 H3BNG1 76 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 CCL18P55774 89 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 CENPWQ5EE01 88 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 ZNF506Q5JVG8 444 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 MLST8Q9BVC4 326 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 204.2 ms