RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ARL5CA6NH57 179 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 BBIP1A8MTZ0 92 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 HIGD1CA8MV81 97 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 M0QZK8 103 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 RPL22P35268 128 aaKnown RBP-0.08□□□□□ -2.42
VPS50-216ENST00000484954 GTF2A1P52655 376 aaPredicted RBP-0.08□□□□□ -2.42
VPS50-216ENST00000484954 C3orf62Q6ZUJ4 267 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 CROCCP2Q86T23 111 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 OR51A4Q8NGJ6 313 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 ATPIF1Q9UII2 106 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 EPPK1P58107 5090 aaKnown RBP-0.08□□□□□ -2.42
VPS50-216ENST00000484954 NF1P21359 2839 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 ROCK1Q13464 1354 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 HYDINQ4G0P3 5121 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 LOC107986453A0A1B0GWG9 222 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 TMEM30CPA0ZSE6 113 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 IFITM5A6NNB3 132 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 HBDP02042 147 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 SLC25A5P05141 298 aaKnown RBP-0.09□□□□□ -2.42
VPS50-216ENST00000484954 FABP1P07148 127 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 Q5XG85 94 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 PTPRDP23468 1912 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 LOC285556D6RIA3 1793 aa-0.09□□□□□ -2.42
VPS50-216ENST00000484954 TCOF1Q13428 1488 aaKnown RBP-0.1□□□□□ -2.42
VPS50-216ENST00000484954 HECTD1Q9ULT8 2610 aa-0.1□□□□□ -2.42
VPS50-216ENST00000484954 IGF2RP11717 2491 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 DOPEY1Q5JWR5 2465 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 PDZD2O15018 2839 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 MYLKQ15746 1914 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 MYH2Q9UKX2 1941 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 A0A0G2JMM0 328 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 PRORSD1PA6NEY8 169 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 E7EQ34 232 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 TPST1O60507 370 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 EDF1O60869 148 aaKnown RBP-0.1□□□□□ -2.43
VPS50-216ENST00000484954 IL7P13232 177 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 SRP9P49458 86 aaKnown RBP-0.1□□□□□ -2.43
VPS50-216ENST00000484954 TMEM128Q5BJH2 165 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 OR5A2Q8NGI9 324 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 OR9Q1Q8NGQ5 310 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 OTOSQ8NHW6 89 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 BRK1Q8WUW1 75 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 DMAC1Q96GE9 116 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 CCDC115Q96NT0 180 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 AP1S3Q96PC3 154 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 DLC1Q96QB1 1528 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 FASNP49327 2511 aaKnown RBP-0.1□□□□□ -2.43
VPS50-216ENST00000484954 JMJD1CQ15652 2540 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 COL6A5A8TX70 2615 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 USH2AO75445 5202 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 TANC2Q9HCD6 1990 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 PKD1L1Q8TDX9 2849 aa-0.1□□□□□ -2.43
VPS50-216ENST00000484954 SYNMO15061 1565 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 PIEZO2Q9H5I5 2752 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 CACNA1HO95180 2353 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 ZANQ9Y493 2812 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 LRP2P98164 4655 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 IGHV1-24A0A0C4DH33 117 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 CXorf51AA0A1B0GTR3 108 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 UQCRQO14949 82 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 CCKP06307 115 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 ETV6P41212 452 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 RPS28P62857 69 aaKnown RBP-0.11□□□□□ -2.43
VPS50-216ENST00000484954 KLKP1Q107X0 134 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 IQCJQ1A5X6 159 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 IDO2Q6ZQW0 420 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 VMO1Q7Z5L0 202 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 OR8J3Q8NGG0 315 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 SMIM7Q9BQ49 75 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 CENPHQ9H3R5 247 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 PROK2Q9HC23 129 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 TGP01266 2768 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 ABCA12Q86UK0 2595 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 UBR2Q8IWV8 1755 aa-0.11□□□□□ -2.43
VPS50-216ENST00000484954 NUP210LQ5VU65 1888 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 ABCA4P78363 2273 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 SETXQ7Z333 2677 aaKnown RBP-0.12□□□□□ -2.43
VPS50-216ENST00000484954 MYH3P11055 1940 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 FXYD1O00168 92 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 FAM107AO95990 144 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 IFNA21P01568 189 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 TCRAP04437 139 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 MPC1LP0DKB6 136 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 CKS2P33552 79 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 S100A5P33763 92 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 TOMM20LQ6UXN7 152 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 OR4S1Q8NGB4 309 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 ATG5Q9H1Y0 275 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 TMEM14BQ9NUH8 114 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 A2MP01023 1474 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 CELSR2Q9HCU4 2923 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 NINQ8N4C6 2090 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 ABCA1O95477 2261 aa-0.12□□□□□ -2.43
VPS50-216ENST00000484954 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.13□□□□□ -2.43
VPS50-216ENST00000484954 MED23Q9ULK4 1368 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 PFDN1O60925 122 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 MT-ND4LP03901 98 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 TFF1P04155 84 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 ADCYAP1P18509 176 aa-0.13□□□□□ -2.43
VPS50-216ENST00000484954 ELOF1P60002 83 aaKnown RBP-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms