RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 KCNS1Q96KK3 526 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 TP53TG3Q9ULZ0 132 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 TENM3Q9P273 2699 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 FBN3Q75N90 2809 aa8.83□□□□□ -1
SDC1-206ENST00000482879 IGKV3D-20A0A0C4DH25 116 aa8.83□□□□□ -1
SDC1-206ENST00000482879 C19orf71A6NCJ1 209 aa8.83□□□□□ -1
SDC1-206ENST00000482879 B4DEV8 164 aa8.83□□□□□ -1
SDC1-206ENST00000482879 GNRH2O43555 120 aa8.83□□□□□ -1
SDC1-206ENST00000482879 MIFP14174 115 aa8.83□□□□□ -1
SDC1-206ENST00000482879 ADCYAP1P18509 176 aa8.83□□□□□ -1
SDC1-206ENST00000482879 TDRG1Q3Y452 100 aa8.83□□□□□ -1
SDC1-206ENST00000482879 NUDT10Q8NFP7 164 aa8.83□□□□□ -1
SDC1-206ENST00000482879 NUDT11Q96G61 164 aa8.83□□□□□ -1
SDC1-206ENST00000482879 SEC11CQ9BY50 192 aa8.83□□□□□ -1
SDC1-206ENST00000482879 RNASE7Q9H1E1 156 aaKnown RBP8.83□□□□□ -1
SDC1-206ENST00000482879 TRGV11A0A075B6L2 103 aa8.82□□□□□ -1
SDC1-206ENST00000482879 TMSB15BA0A087X1C1 80 aa8.82□□□□□ -1
SDC1-206ENST00000482879 IGHV4-28A0A0C4DH34 117 aa8.82□□□□□ -1
SDC1-206ENST00000482879 TMEM189A5PLL7 270 aa8.82□□□□□ -1
SDC1-206ENST00000482879 KRBOX1C9JBD0 128 aa8.82□□□□□ -1
SDC1-206ENST00000482879 P01737 135 aa8.82□□□□□ -1
SDC1-206ENST00000482879 TYMSP04818 313 aa8.82□□□□□ -1
SDC1-206ENST00000482879 ERVFC1-1P60608 527 aa8.82□□□□□ -1
SDC1-206ENST00000482879 RPL19P84098 196 aaKnown RBP8.82□□□□□ -1
SDC1-206ENST00000482879 LINC01559Q495D7 138 aa8.82□□□□□ -1
SDC1-206ENST00000482879 ZNF493Q6ZR52 646 aa8.82□□□□□ -1
SDC1-206ENST00000482879 ISOC2Q96AB3 205 aa8.82□□□□□ -1
SDC1-206ENST00000482879 PRKDCP78527 4128 aaKnown RBP8.82□□□□□ -1
SDC1-206ENST00000482879 GRIFINA4D1Z8 144 aa8.81□□□□□ -1
SDC1-206ENST00000482879 DEFB4AO15263 64 aa8.81□□□□□ -1
SDC1-206ENST00000482879 GATCO43716 136 aaKnown RBP8.81□□□□□ -1
SDC1-206ENST00000482879 EMP1P54849 157 aa8.81□□□□□ -1
SDC1-206ENST00000482879 PNRC1Q12796 327 aaPredicted RBP8.81□□□□□ -1
SDC1-206ENST00000482879 IBA57Q5T440 356 aaKnown RBP8.81□□□□□ -1
SDC1-206ENST00000482879 FAM231DQ6ZW35 169 aa8.81□□□□□ -1
SDC1-206ENST00000482879 Q8NAQ8 132 aa8.81□□□□□ -1
SDC1-206ENST00000482879 OR2D3Q8NGH3 330 aa8.81□□□□□ -1
SDC1-206ENST00000482879 RNASE8Q8TDE3 154 aaKnown RBP8.81□□□□□ -1
SDC1-206ENST00000482879 TMEM263Q8WUH6 116 aaKnown RBP8.81□□□□□ -1
SDC1-206ENST00000482879 C16orf74Q96GX8 76 aa8.81□□□□□ -1
SDC1-206ENST00000482879 OSTCQ9NRP0 149 aa8.81□□□□□ -1
SDC1-206ENST00000482879 MDFICQ9P1T7 246 aa8.81□□□□□ -1
SDC1-206ENST00000482879 DNAH9Q9NYC9 4486 aa8.81□□□□□ -1
SDC1-206ENST00000482879 MUC4Q99102 2169 aa8.8□□□□□ -1
SDC1-206ENST00000482879 IGHV3-16A0A0C4DH30 117 aa8.8□□□□□ -1
SDC1-206ENST00000482879 S100A4P26447 101 aaKnown RBP8.8□□□□□ -1
SDC1-206ENST00000482879 ASIPP42127 132 aa8.8□□□□□ -1
SDC1-206ENST00000482879 RPS20P60866 119 aaKnown RBP8.8□□□□□ -1
SDC1-206ENST00000482879 ZNF415Q09FC8 603 aa8.8□□□□□ -1
SDC1-206ENST00000482879 C10orf91Q5T1B1 145 aa8.8□□□□□ -1
SDC1-206ENST00000482879 C15orf54Q8N8G6 183 aa8.8□□□□□ -1
SDC1-206ENST00000482879 SFRP2Q96HF1 295 aa8.8□□□□□ -1
SDC1-206ENST00000482879 RPP21Q9H633 154 aaKnown RBP8.8□□□□□ -1
SDC1-206ENST00000482879 GSN-AS1Q9NRJ2 163 aa8.8□□□□□ -1
SDC1-206ENST00000482879 XKRY2A2RUG3 117 aa8.79□□□□□ -1
SDC1-206ENST00000482879 SNURFLB1AK76 121 aa8.79□□□□□ -1
SDC1-206ENST00000482879 ZNF575Q86XF7 245 aa8.79□□□□□ -1
SDC1-206ENST00000482879 C11orf72Q8NBR9 251 aa8.79□□□□□ -1
SDC1-206ENST00000482879 OR10G8Q8NGN5 311 aa8.79□□□□□ -1
SDC1-206ENST00000482879 CARHSP1Q9Y2V2 147 aaKnown RBP8.79□□□□□ -1
SDC1-206ENST00000482879 TIMM8BQ9Y5J9 83 aaPredicted RBP8.79□□□□□ -1
SDC1-206ENST00000482879 HUWE1Q7Z6Z7 4374 aaKnown RBP8.78□□□□□ -1
SDC1-206ENST00000482879 A0A0J9YWU9 116 aa8.78□□□□□ -1
SDC1-206ENST00000482879 PLAC8L1A1L4L8 177 aa8.78□□□□□ -1
SDC1-206ENST00000482879 GZMBP10144 247 aa8.78□□□□□ -1
SDC1-206ENST00000482879 TCL1AP56279 114 aa8.78□□□□□ -1
SDC1-206ENST00000482879 DNLZQ5SXM8 178 aa8.78□□□□□ -1
SDC1-206ENST00000482879 NOP10Q9NPE3 64 aaKnown RBP8.78□□□□□ -1
SDC1-206ENST00000482879 U3KQK5 164 aa8.78□□□□□ -1
SDC1-206ENST00000482879 A8MWL6 223 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 H3BVH4 76 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 APOC3P02656 99 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 MT-ND4LP03901 98 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 CXCL1P09341 107 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 ARMS2P0C7Q2 107 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 RNASE3P12724 160 aaKnown RBP8.77□□□□□ -1.01
SDC1-206ENST00000482879 SPXQ9BT56 116 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 C11orf68Q9H3H3 251 aaKnown RBP8.77□□□□□ -1.01
SDC1-206ENST00000482879 V9GYV3 84 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 COL7A1Q02388 2944 aa8.77□□□□□ -1.01
SDC1-206ENST00000482879 PPP1R2P9O14990 202 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 DAZ2Q13117 558 aaKnown RBP8.76□□□□□ -1.01
SDC1-206ENST00000482879 RNF212Q495C1 297 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 CT83Q5H943 113 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 FAM222AQ5U5X8 452 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 IL17DQ8TAD2 202 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 C9orf85Q96MD7 179 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 IL36BQ9NZH7 164 aa8.76□□□□□ -1.01
SDC1-206ENST00000482879 LYRM9A8MSI8 78 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 M0R2P5 195 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 SPART-AS1P0CW21 52 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 MED14OSP0DP75 135 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 FER1L6-AS1Q8NA97 138 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 CLRN3Q8NCR9 226 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 ANAPC16Q96DE5 110 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 TPPP3Q9BW30 176 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 DKK2Q9UBU2 259 aa8.75□□□□□ -1.01
SDC1-206ENST00000482879 STAB2Q8WWQ8 2551 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 TRGV1A0A0A0MS02 117 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 A0A1W2PPQ1 181 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms