RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 IGLC1P0CG04 106 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 CRYGAP11844 174 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 IL7P13232 177 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 C6orf52Q5T4I8 152 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 EIF5AL1Q6IS14 154 aaKnown RBP1.87□□□□□ -2.11
SF3B1-210ENST00000482158 ZNF705AQ6ZN79 300 aaPredicted RBP1.87□□□□□ -2.11
SF3B1-210ENST00000482158 COPS9Q8WXC6 57 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 ZNF714Q96N38 554 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 SCGB3A1Q96QR1 104 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 VAMP8Q9BV40 100 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 DPY30Q9C005 99 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 CCDC88CQ9P219 2028 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 LINC00312Q9Y6C7 94 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 SERP1Q9Y6X1 66 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 POLA1P09884 1462 aaPredicted RBP1.87□□□□□ -2.11
SF3B1-210ENST00000482158 GAPVD1Q14C86 1478 aa1.87□□□□□ -2.11
SF3B1-210ENST00000482158 SCAF11Q99590 1463 aaKnown RBP1.87□□□□□ -2.11
SF3B1-210ENST00000482158 SCN3AQ9NY46 2000 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 SUPT6HQ7KZ85 1726 aaKnown RBP1.86□□□□□ -2.11
SF3B1-210ENST00000482158 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.86□□□□□ -2.11
SF3B1-210ENST00000482158 MARF1Q9Y4F3 1742 aaKnown RBP1.86□□□□□ -2.11
SF3B1-210ENST00000482158 STRCQ7RTU9 1775 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 MCRIP1C9JLW8 97 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 APOC4-APOC2K7ER74 178 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 APOC2P02655 101 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 MT-ATP8P03928 68 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 CCL4P13236 92 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 FXYD7P58549 80 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 DYNLT1P63172 113 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 AKR1C1Q04828 323 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 Q6ZS92 163 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 OR5AK2Q8NH90 309 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 PFN4Q8NHR9 129 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 RAB37Q96AX2 223 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 LINC00052Q96N35 136 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 SAR1AQ9NR31 198 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 EML5Q05BV3 1969 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 ERVK-7P63135 1459 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 DOCK2Q92608 1830 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 PPRC1Q5VV67 1664 aaKnown RBP1.86□□□□□ -2.11
SF3B1-210ENST00000482158 KNDC1Q76NI1 1749 aa1.86□□□□□ -2.11
SF3B1-210ENST00000482158 SNRNP200O75643 2136 aaKnown RBP1.85□□□□□ -2.11
SF3B1-210ENST00000482158 DIP2BQ9P265 1576 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 PRRC2BQ5JSZ5 2229 aaKnown RBP1.85□□□□□ -2.11
SF3B1-210ENST00000482158 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.85□□□□□ -2.11
SF3B1-210ENST00000482158 A0A0D9SG52 128 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 LOC107986453A0A1B0GWG9 222 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 ZNF737O75373 536 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 TRACP01848 142 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 RBP4P02753 201 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 ERHP84090 104 aaKnown RBP1.85□□□□□ -2.11
SF3B1-210ENST00000482158 Q0VG73 95 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 ZNF846Q147U1 533 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 CDK5R1Q15078 307 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 MIAQ16674 131 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 KRTAP21-3Q3LHN1 58 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 MIC13Q5XKP0 118 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 FP248Q71RG6 208 aaPredicted RBP1.85□□□□□ -2.11
SF3B1-210ENST00000482158 CCL4L1Q8NHW4 92 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 AQP10Q96PS8 301 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 ATG5Q9H1Y0 275 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 BCL2L10Q9HD36 194 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 FANCAO15360 1455 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 PLEKHH2Q8IVE3 1493 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 TANC1Q9C0D5 1861 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 COL24A1Q17RW2 1714 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 CASP8AP2Q9UKL3 1982 aa1.85□□□□□ -2.11
SF3B1-210ENST00000482158 SHROOM2Q13796 1616 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 TET3O43151 1660 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 KIF21AQ7Z4S6 1674 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 A6NN06 94 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 M0R2P5 195 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 MSMBP08118 114 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 TRAPPC2P0DI81 140 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 TRAPPC2BP0DI82 140 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 SLC25A4P12235 298 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 TPT1P13693 172 aaKnown RBP1.84□□□□□ -2.11
SF3B1-210ENST00000482158 FABP4P15090 132 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 ETV6P41212 452 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 PCBD1P61457 104 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 BLCAPP62952 87 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 SUPT4H1P63272 117 aaKnown RBP1.84□□□□□ -2.11
SF3B1-210ENST00000482158 DCDP81605 110 aaKnown RBP1.84□□□□□ -2.11
SF3B1-210ENST00000482158 SPRNQ5BIV9 151 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 OR5AS1Q8N127 324 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 FAM216BQ8N7L0 139 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 NPVFQ9HCQ7 196 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 AP4S1Q9Y587 144 aa1.84□□□□□ -2.11
SF3B1-210ENST00000482158 LAMC3Q9Y6N6 1575 aa1.84□□□□□ -2.12
SF3B1-210ENST00000482158 DISP1Q96F81 1524 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 PATJQ8NI35 1801 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 SDCBPO00560 298 aaPredicted RBP1.83□□□□□ -2.12
SF3B1-210ENST00000482158 YPEL1O60688 119 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 TIMM17BO60830 172 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 EDF1O60869 148 aaKnown RBP1.83□□□□□ -2.12
SF3B1-210ENST00000482158 HYPMO75409 117 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 TCL1BO95988 128 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 GYPBP06028 91 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 LINC00032P0C843 101 aa1.83□□□□□ -2.12
SF3B1-210ENST00000482158 LSM3P62310 102 aaKnown RBP1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms