RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 E7EQL1 145 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 FOXE3Q13461 319 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 FOXI2Q6ZQN5 318 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 TP53TG1Q9Y2A0 90 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 KLF12Q9Y4X4 402 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 FN1P02751 2386 aaKnown RBP10.62□□□□□ -0.71
USP42-206ENST00000479544 IGKV2D-26A0A0A0MRZ7 120 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 SCGB1A1P11684 91 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 GATA4P43694 442 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 PKD1L2Q7Z442 2459 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 F8VRH5 84 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 RRN3P1Q2M238 152 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 VMO1Q7Z5L0 202 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 ZNF462Q96JM2 2506 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 FCN3O75636 299 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 ZNF688P0C7X2 276 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 PAX8Q06710 450 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 PDE6HQ13956 83 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 ZNF876PQ49A33 203 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 Q71RC1 249 aaPredicted RBP10.61□□□□□ -0.71
USP42-206ENST00000479544 C3orf56Q8N813 242 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 TOMM7Q9P0U1 55 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 WT1P19544 449 aaPredicted RBP10.61□□□□□ -0.71
USP42-206ENST00000479544 DEFB1P60022 68 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 C2orf82Q6UX34 121 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 FGF6P10767 208 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 CFHR4Q92496 578 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 DPH3P1Q9H4G8 78 aa10.61□□□□□ -0.71
USP42-206ENST00000479544 TRAV8-3A0A0A6YYJ7 113 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 SPAG8Q99932 426 aaPredicted RBP10.6□□□□□ -0.71
USP42-206ENST00000479544 TNFRSF18Q9Y5U5 241 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 C10orf142B7Z368 130 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 PRAC2D3DTV9 90 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 PPP1R17O96001 155 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 LHBP01229 141 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 URB1-AS1Q96HZ7 61 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 TMEM14CQ9P0S9 112 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 SIVA1O15304 175 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 BRD3OSQ6XYD6 125 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 PRSS22Q9GZN4 317 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 FAM215AQ9Y5M1 114 aa10.6□□□□□ -0.71
USP42-206ENST00000479544 F6UB75 175 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 C2orf91Q6ZV80 131 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 OR13C6PQ8NH95 151 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 MLST8Q9BVC4 326 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 PRSS29PA6NIE9 313 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 CD28P10747 220 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 CIRBPQ14011 172 aaKnown RBP10.59□□□□□ -0.71
USP42-206ENST00000479544 PPDPFLQ8WWR9 84 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 AGPAT4-IT1Q9H0P7 198 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 K7EM74 188 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 NCKAP5O14513 1909 aa10.59□□□□□ -0.71
USP42-206ENST00000479544 K7EIM0 57 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 PAPPA-AS1Q5QFB9 102 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 Q6ZS92 163 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 RPL39LQ96EH5 51 aaKnown RBP10.58□□□□□ -0.72
USP42-206ENST00000479544 SMIM2Q9BVW6 85 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 CRYBA4P53673 196 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 DSCAMO60469 2012 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 PRR30Q53SZ7 412 aaPredicted RBP10.58□□□□□ -0.72
USP42-206ENST00000479544 KNCNA6PVL3 124 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 ODF1Q14990 250 aa10.58□□□□□ -0.72
USP42-206ENST00000479544 RNASE13Q5GAN3 156 aaKnown RBP10.58□□□□□ -0.72
USP42-206ENST00000479544 NTN5Q8WTR8 489 aaPredicted RBP10.58□□□□□ -0.72
USP42-206ENST00000479544 NAV2Q8IVL1 2488 aa10.57□□□□□ -0.72
USP42-206ENST00000479544 A0A087WX48 190 aa10.57□□□□□ -0.72
USP42-206ENST00000479544 RUSC1-AS1Q66K80 236 aa10.57□□□□□ -0.72
USP42-206ENST00000479544 C22orf34Q6ZV56 151 aa10.57□□□□□ -0.72
USP42-206ENST00000479544 ATP6V0E1O15342 81 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 ZNF80P51504 273 aaPredicted RBP10.56□□□□□ -0.72
USP42-206ENST00000479544 C19orf54Q5BKX5 351 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 OR11H6Q8NGC7 330 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 CLUHP3Q96NS8 147 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 I3L2K1 104 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 M0R2P5 195 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 DNAL4O96015 105 aa10.56□□□□□ -0.72
USP42-206ENST00000479544 CGB3P0DN86 165 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 CGB7P0DN87 165 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 C8orf86Q6ZUL3 223 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 DUX5Q96PT3 197 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 RS1O15537 224 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 GNRH2O43555 120 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 SLC25A20O43772 301 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 INSL3P51460 131 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 SNRPD3P62318 126 aaKnown RBP10.55□□□□□ -0.72
USP42-206ENST00000479544 SPRY4Q9C004 299 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 GAS8-AS1O95177 125 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 IGLV2-23P01705 113 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 LINC01559Q495D7 138 aa10.55□□□□□ -0.72
USP42-206ENST00000479544 NPFFO15130 113 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 CRIP1P50238 77 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 VCYO14598 125 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 NUP37Q8NFH4 326 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 PRO1854Q9UHT4 67 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 FRYQ5TBA9 3013 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 SDHAF1A6NFY7 115 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 SMIM20Q8N5G0 67 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 DYNLRB2Q8TF09 96 aa10.54□□□□□ -0.72
USP42-206ENST00000479544 LINC00311Q8N616 119 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 TRAV12-2A0A075B6T6 113 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms