RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CDKN1BP46527 198 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 KIR3DS1Q14943 382 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 OR10J6PQ8NGY7 276 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 LINC00477Q96M19 166 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 NXT2Q9NPJ8 142 aaKnown RBP6.78□□□□□ -1.32
SYNE1-217ENST00000466159 DKK2Q9UBU2 259 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 FCER1GP30273 86 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 FBN2P35556 2912 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 PTTG1IPP53801 180 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 CFHR3Q02985 330 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 C2orf91Q6ZV80 131 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 SMIM15Q7Z3B0 74 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 MAPK1IP1LQ8NDC0 245 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 OR2K2Q8NGT1 345 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 LENEPQ9Y5L5 61 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 POLQO75417 2590 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 IGLV2-18A0A075B6J9 118 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 IGHV4-4A0A075B6R2 117 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 A0A0G2JLM5 398 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 OVOL1O14753 267 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 IGHV4-59P01825 116 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 PRB1P04280 392 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 C10orf99Q6UWK7 81 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 NRACQ8N912 160 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 SPOCK3Q9BQ16 436 aa6.77□□□□□ -1.33
SYNE1-217ENST00000466159 DOPEY2Q9Y3R5 2298 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 ZFYVE26Q68DK2 2539 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 ANKRD17O75179 2603 aaKnown RBP6.76□□□□□ -1.33
SYNE1-217ENST00000466159 FGF6P10767 208 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 DEFB112Q30KQ8 113 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 ERASQ7Z444 233 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 Q8N8P6 123 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 TMEM158Q8WZ71 300 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 DAZ1Q9NQZ3 744 aaKnown RBP6.76□□□□□ -1.33
SYNE1-217ENST00000466159 FAM208BQ5VWN6 2430 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 CENPEQ02224 2701 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 M0R381 172 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 RNASE4P34096 147 aaKnown RBP6.76□□□□□ -1.33
SYNE1-217ENST00000466159 UBE2V1Q13404 147 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 C12orf54Q6X4T0 127 aa6.76□□□□□ -1.33
SYNE1-217ENST00000466159 TRAV21A0A0B4J279 112 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 ANXA2RQ3ZCQ2 193 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 DPF1Q92782 380 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 PEF1Q9UBV8 284 aaKnown RBP6.75□□□□□ -1.33
SYNE1-217ENST00000466159 SMPXQ9UHP9 88 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 GNRH2O43555 120 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 PRSS1P07477 247 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 S100A4P26447 101 aaKnown RBP6.75□□□□□ -1.33
SYNE1-217ENST00000466159 OR1N2Q8NGR9 330 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 FAM19A4Q96LR4 140 aa6.75□□□□□ -1.33
SYNE1-217ENST00000466159 TAX1BP3O14907 124 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 CD5LO43866 347 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 GATA3P23771 443 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 PSMB8P28062 276 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 DSCR9P59020 149 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 LINC01356Q8N9X3 169 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 WFDC12Q8WWY7 111 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 TGFAP01135 160 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 SMIM17P0DL12 118 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 NMUP48645 174 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 ODF1Q14990 250 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 PCP2Q8IVA1 136 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 BOD1L2Q8IYS8 172 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 DEFB125Q8N687 156 aa6.74□□□□□ -1.33
SYNE1-217ENST00000466159 ZNF462Q96JM2 2506 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 A0A096LNT2 108 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 PRSS47A8MTI9 375 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 SLC25A16P16260 332 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 ASIPP42127 132 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 LAGE3Q14657 143 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 C14orf178Q8N769 122 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-217ENST00000466159 FOXC2Q99958 501 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 PHLDA3Q9Y5J5 127 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 MUC4Q99102 2169 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 USP24Q9UPU5 2620 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 CBY3A6NI87 242 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 HHLA3Q9XRX5 114 aa6.73□□□□□ -1.33
SYNE1-217ENST00000466159 LRRK2Q5S007 2527 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 A1L4Q6 167 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 K7EMT4 169 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 RNASE3P12724 160 aaKnown RBP6.72□□□□□ -1.33
SYNE1-217ENST00000466159 TMEM97Q5BJF2 176 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 APRG1Q8IVJ8 170 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 DCANP1Q8TF63 244 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 MRAP2Q96G30 205 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 ZMAT4Q9H898 229 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 MXRA5Q9NR99 2828 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 IGKV2D-26A0A0A0MRZ7 120 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 C7orf71A4D174 169 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 SRSF1Q07955 248 aaKnown RBP eCLIP6.72□□□□□ -1.33
SYNE1-217ENST00000466159 VAMP3Q15836 100 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 RASL10AQ92737 203 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 RPL39LQ96EH5 51 aaKnown RBP6.72□□□□□ -1.33
SYNE1-217ENST00000466159 BBC3Q96PG8 261 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-217ENST00000466159 SORL1Q92673 2214 aa6.72□□□□□ -1.33
SYNE1-217ENST00000466159 SMIM2Q9BVW6 85 aa6.71□□□□□ -1.33
SYNE1-217ENST00000466159 TTTY13Q9BZ97 58 aa6.71□□□□□ -1.33
SYNE1-217ENST00000466159 DPH3P1Q9H4G8 78 aa6.71□□□□□ -1.33
SYNE1-217ENST00000466159 ZNF580Q9UK33 172 aa6.71□□□□□ -1.33
SYNE1-217ENST00000466159 AGRNO00468 2067 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms