RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RNF183Q96D59 192 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 M0R1W7 72 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 FSTL3O95633 263 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 HTN1P15515 57 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 CD24P25063 80 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 LYPD2Q6UXB3 125 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 LCNL1Q6ZST4 164 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 COL8A2P25067 703 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 SPRNQ5BIV9 151 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 LINC00173Q6ZV60 143 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 LY6G5BQ8NDX9 201 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 CARD19Q96LW7 228 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 SMIM2Q9BVW6 85 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 TRAV12-1A0A0B4J245 112 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 TRBV6-1A0A0K0K1D8 114 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 SOCS3O14543 225 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 LEPROTO15243 131 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 ZNF833PQ6ZTB9 187 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 PIFOQ8TCI5 191 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 SPXQ9BT56 116 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 LINC00574Q9H8X3 128 aa4.9□□□□□ -1.62
VPS13D-202ENST00000460333 ABCA1O95477 2261 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 C22orf46C9J442 243 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 LYNX1G3V0Z9 82 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 DUSP14O95147 198 aaKnown RBP4.9□□□□□ -1.63
VPS13D-202ENST00000460333 LYNX1P0DP58 116 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 LOXP28300 417 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-202ENST00000460333 C10orf55Q5SWW7 151 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 ZNF843Q8N446 348 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 ZC2HC1AQ96GY0 325 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 TRIOO75962 3097 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 OOSP1A8MZH6 123 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 E9PLD3 99 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 H3BRN7 92 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 CD7P09564 240 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 MYOD1P15172 320 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 C16orf54Q6UWD8 224 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 RNF114Q9Y508 228 aa4.9□□□□□ -1.63
VPS13D-202ENST00000460333 XIRP2A4UGR9 3374 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 IGLV2-14P01704 120 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV1-69DA0A0B4J2H0 117 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 A0A1B0GXF2 115 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 CGB3P0DN86 165 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 CGB7P0DN87 165 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 NDUFV3P56181 108 aaKnown RBP4.89□□□□□ -1.63
VPS13D-202ENST00000460333 DEFB113Q30KQ7 82 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 C22orf34Q6ZV56 151 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 Q71RC1 249 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-202ENST00000460333 PRR25Q96S07 402 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 TP53TG3Q9ULZ0 132 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 ZNF134P52741 427 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 MLANAQ16655 118 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 DUX4L9Q6RFH8 374 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-202ENST00000460333 SIGLEC15Q6ZMC9 328 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 TMEM86BQ8N661 226 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 GTSF1Q8WW33 167 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 NAV2Q8IVL1 2488 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 H3BT86 120 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-23P01764 117 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 TMEM258P61165 79 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 C8orf49Q96NF6 230 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 SIGLEC9Q9Y336 463 aa4.89□□□□□ -1.63
VPS13D-202ENST00000460333 J3QQQ9 107 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 GRNP28799 593 aaKnown RBP4.88□□□□□ -1.63
VPS13D-202ENST00000460333 CLEC19AQ6UXS0 136 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 IL17RELQ6ZVW7 336 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 Q8TAT8 98 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 TP53TG1Q9Y2A0 90 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-64A0A075B6Q5 118 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 NDUFC2O95298 119 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 TRGV3P03979 118 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 C5orf64Q2M2E5 130 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 DEFB121Q5J5C9 76 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 FAM120AOSQ5T036 256 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 MINOS1Q5TGZ0 78 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 TRPT1Q86TN4 253 aaKnown RBP4.88□□□□□ -1.63
VPS13D-202ENST00000460333 DTX2Q86UW9 622 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 TM2D2Q9BX73 214 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 MINOS1-NBL1R4GNA1 71 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 S4R3C0 116 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 BUB1B-PAK6H3BSN5 160 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 LINC00205P59089 165 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 LINC01620Q4KN68 170 aa4.88□□□□□ -1.63
VPS13D-202ENST00000460333 A0A0B4J2C4 111 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-66A0A0C4DH42 116 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 SYNJ2BPP57105 145 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 SRSF2Q01130 221 aaKnown RBP4.87□□□□□ -1.63
VPS13D-202ENST00000460333 ZNF493Q6ZR52 646 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV1-3A0A0C4DH29 117 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 TRBV10-2A0A0K0K1G8 114 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 ODF3L1Q8IXM7 274 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 C14orf178Q8N769 122 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-202ENST00000460333 CTSZQ9UBR2 303 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 DYSFO75923 2080 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 SPTBN4Q9H254 2564 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-35A0A0C4DH35 117 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 EIF4EBP1Q13541 118 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-202ENST00000460333 RBMY1FQ15415 496 aaKnown RBP4.87□□□□□ -1.63
VPS13D-202ENST00000460333 ITLN2Q8WWU7 325 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-202ENST00000460333 TIMM23O14925 209 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms