RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 C6orf106Q9H6K1 298 aaPredicted RBP4.01□□□□□ -1.77
VPS41-209ENST00000457055 ZNF286AQ9HBT8 521 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 SDF2L1Q9HCN8 221 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 ZNF581Q9P0T4 197 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 ITPR2Q14571 2701 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 SDK2Q58EX2 2172 aa4□□□□□ -1.77
VPS41-209ENST00000457055 TNRC6BQ9UPQ9 1833 aaKnown RBP4□□□□□ -1.77
VPS41-209ENST00000457055 SETD2Q9BYW2 2564 aaPredicted RBP4□□□□□ -1.77
VPS41-209ENST00000457055 IGKV1-27A0A075B6S5 117 aa4□□□□□ -1.77
VPS41-209ENST00000457055 IGHV3OR16-12A0A075B7B8 117 aa4□□□□□ -1.77
VPS41-209ENST00000457055 TRAV16A0A0A6YYK6 109 aaPredicted RBP4□□□□□ -1.77
VPS41-209ENST00000457055 TRAV2A0A0B4J234 112 aa4□□□□□ -1.77
VPS41-209ENST00000457055 A0A0D9SEW6 157 aa4□□□□□ -1.77
VPS41-209ENST00000457055 KLF18A0A0U1RQI7 1052 aa4□□□□□ -1.77
VPS41-209ENST00000457055 hADV29S1A0JD25 119 aa4□□□□□ -1.77
VPS41-209ENST00000457055 IGHV3-7P01780 117 aa4□□□□□ -1.77
VPS41-209ENST00000457055 FRMD6-AS1P0C7T7 363 aa4□□□□□ -1.77
VPS41-209ENST00000457055 ZNF883P0CG24 379 aa4□□□□□ -1.77
VPS41-209ENST00000457055 MPV17P39210 176 aa4□□□□□ -1.77
VPS41-209ENST00000457055 CCL8P80075 99 aa4□□□□□ -1.77
VPS41-209ENST00000457055 ZNF876PQ49A33 203 aa4□□□□□ -1.77
VPS41-209ENST00000457055 MIC13Q5XKP0 118 aa4□□□□□ -1.77
VPS41-209ENST00000457055 CEND1Q8N111 149 aa4□□□□□ -1.77
VPS41-209ENST00000457055 GTSF1Q8WW33 167 aa4□□□□□ -1.77
VPS41-209ENST00000457055 ZNF714Q96N38 554 aa4□□□□□ -1.77
VPS41-209ENST00000457055 PGLYRP2Q96PD5 576 aa4□□□□□ -1.77
VPS41-209ENST00000457055 CYTL1Q9NRR1 136 aa4□□□□□ -1.77
VPS41-209ENST00000457055 COL4A2P08572 1712 aa4□□□□□ -1.77
VPS41-209ENST00000457055 BAZ2BQ9UIF8 2168 aaKnown RBP4□□□□□ -1.77
VPS41-209ENST00000457055 FLNCQ14315 2725 aa4□□□□□ -1.77
VPS41-209ENST00000457055 NAV3Q8IVL0 2385 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 MED13LQ71F56 2210 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 MYO16Q9Y6X6 1858 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 TRAV1-1A0A0B4J248 108 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 IGKV6D-41A0A0C4DH26 115 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 MDFIC2A0A1B0GVS7 189 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 ZNF736B4DX44 427 aaPredicted RBP3.99□□□□□ -1.77
VPS41-209ENST00000457055 BUB1B-PAK6H3BSN5 160 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 ZNF324O75467 553 aaPredicted RBP3.99□□□□□ -1.77
VPS41-209ENST00000457055 ZNF136P52737 540 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 BRWD1-AS2P59051 145 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 CCL20P78556 96 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 KRTAP27-1Q3LI81 207 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 C12orf73Q69YU5 71 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 GUSBP11Q6P575 273 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 TIFABQ6ZNK6 161 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 Q6ZS52 159 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 C7orf65Q6ZTY9 151 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 TOMM5Q8N4H5 51 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 FGF13Q92913 245 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 OPRPNQ99935 248 aaPredicted RBP3.99□□□□□ -1.77
VPS41-209ENST00000457055 PARP12Q9H0J9 701 aaKnown RBP3.99□□□□□ -1.77
VPS41-209ENST00000457055 ZNF702PQ9H963 129 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 LINC00588Q9Y4M8 146 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 SVILO95425 2214 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 MED13Q9UHV7 2174 aa3.99□□□□□ -1.77
VPS41-209ENST00000457055 CABIN1Q9Y6J0 2220 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 TIMM17BO60830 172 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 PTHLHP12272 177 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 IGLL1P15814 213 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 ZNF823P16415 610 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 PCBD1P61457 104 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 FP248Q71RG6 208 aaPredicted RBP3.98□□□□□ -1.77
VPS41-209ENST00000457055 SCXQ7RTU7 201 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 C5orf38Q86SI9 138 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 MARCH3Q86UD3 253 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 GPHB5Q86YW7 130 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 POM121L12Q8N7R1 296 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 MANBALQ9NQG1 85 aa3.98□□□□□ -1.77
VPS41-209ENST00000457055 LRRK1Q38SD2 2015 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 IGHV4-61A0A0C4DH41 118 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 K7EM74 188 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 NUPR1O60356 82 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 SLC25A14O95258 325 aaPredicted RBP3.97□□□□□ -1.77
VPS41-209ENST00000457055 LTAP01374 205 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 IGHV4-59P01825 116 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 PRM2P04554 102 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 AQP1P29972 269 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 UBE2AP49459 152 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 UBE2G1P62253 170 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 ODF3L2Q3SX64 289 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 LINC01554Q52M75 96 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 CFAP126Q5VTH2 177 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 C17orf82Q86X59 251 aaPredicted RBP3.97□□□□□ -1.77
VPS41-209ENST00000457055 Q8N2B8 174 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 SERP2Q8N6R1 65 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 SPTSSAQ969W0 71 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 SLC25A2Q9BXI2 301 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 NPCDR1Q9BY65 106 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 IL36BQ9NZH7 164 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 ZNF492Q9P255 531 aa3.97□□□□□ -1.77
VPS41-209ENST00000457055 KNL1Q8NG31 2342 aa3.96□□□□□ -1.77
VPS41-209ENST00000457055 ZFHX3Q15911 3703 aa3.96□□□□□ -1.77
VPS41-209ENST00000457055 LRBAP50851 2863 aa3.96□□□□□ -1.78
VPS41-209ENST00000457055 IGLV5-45A0A087WSX0 123 aa3.96□□□□□ -1.78
VPS41-209ENST00000457055 IGKV1-9A0A0C4DH69 117 aa3.96□□□□□ -1.78
VPS41-209ENST00000457055 C9JCJ5 164 aa3.96□□□□□ -1.78
VPS41-209ENST00000457055 SNRPFP62306 86 aaKnown RBP3.96□□□□□ -1.78
VPS41-209ENST00000457055 PSMG4Q5JS54 123 aa3.96□□□□□ -1.78
VPS41-209ENST00000457055 Q6ZQT7 251 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms