RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TRAV2A0A0B4J234 112 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 LOC101927531A0A1B0GV80 90 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 CDC42EP2O14613 210 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 SMIM24O75264 130 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 DBIP07108 87 aaKnown RBP0.33□□□□□ -2.36
USP40-209ENST00000452724 SDC4P31431 198 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 PCBD1P61457 104 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 RPL37P61927 97 aaKnown RBP0.33□□□□□ -2.36
USP40-209ENST00000452724 PLGLB1Q02325 96 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 OR8B8Q15620 311 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 ZGRF1Q86YA3 2104 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 PPDPFLQ8WWR9 84 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 VPS25Q9BRG1 176 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 FAM103A1Q9BTL3 118 aaKnown RBP0.33□□□□□ -2.36
USP40-209ENST00000452724 ARAP1Q96P48 1450 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 PBRM1Q86U86 1689 aa0.33□□□□□ -2.36
USP40-209ENST00000452724 MYH3P11055 1940 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 PTPRGP23470 1445 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 TNFSF15O95150 251 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 IGKCP01834 107 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 ADCYAP1P18509 176 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 KLKP1Q107X0 134 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 TMEM244Q5VVB8 128 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 TCTE3Q8IZS6 198 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 MRPL40Q9NQ50 206 aaKnown RBP0.32□□□□□ -2.36
USP40-209ENST00000452724 CALML5Q9NZT1 146 aa0.32□□□□□ -2.36
USP40-209ENST00000452724 A0A096LNT2 108 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 TRBV10-1A0A0K0K1A3 114 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 C9JAW5 83 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 YPEL1O60688 119 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 MT-ND4LP03901 98 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 CCKP06307 115 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 SCGB1A1P11684 91 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 HLA-DRB4P13762 266 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 POLR2JP52435 117 aaKnown RBP0.31□□□□□ -2.36
USP40-209ENST00000452724 ZNF56Q15929 161 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 CCDC153Q494R4 210 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 UNQ5815/PRO19632Q6UWF5 114 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 PYDC1Q8WXC3 89 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 TAS2R8Q9NYW2 309 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 HIGD1AQ9Y241 93 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 DNAJC15Q9Y5T4 150 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 HLA-DRB4X5D2U9 266 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 FRAS1Q86XX4 4008 aa0.31□□□□□ -2.36
USP40-209ENST00000452724 KCPQ6ZWJ8 1503 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 ZDBF2Q9HCK1 2354 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 TEX49A0A1B0GTD5 131 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 CXorf51AA0A1B0GTR3 108 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 LY6G6CO95867 125 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 CD3DP04234 171 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 IL7P13232 177 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 CMPK1P30085 196 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 MORN2Q502X0 79 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 SLC25A26Q70HW3 274 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 PPP1R1CQ8WVI7 109 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 AIF1LQ9BQI0 150 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 TMEM14BQ9NUH8 114 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 ARHGAP31Q2M1Z3 1444 aa0.3□□□□□ -2.36
USP40-209ENST00000452724 NUP210Q8TEM1 1887 aaPredicted RBP0.29□□□□□ -2.36
USP40-209ENST00000452724 OR2H2O95918 312 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 APOC1P02654 83 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 KRTAP2-3P0C7H8 128 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 AKR1D1P51857 326 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 AKAP14Q86UN6 197 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 NDUFA11Q86Y39 141 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 KRTAP2-4Q9BYR9 128 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 KRTAP2-1Q9BYU5 128 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 SLC35B3Q9H1N7 401 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 FANCMQ8IYD8 2048 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 CTTNBP2Q8WZ74 1663 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 CPDO75976 1380 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 UHRF1BP1LA0JNW5 1464 aa0.29□□□□□ -2.36
USP40-209ENST00000452724 GPR98Q8WXG9 6306 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 USP54Q70EL1 1684 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 A0A1B0GW64 132 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 MCRIP1C9JLW8 97 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 FXYD1O00168 92 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 ATP11AUNQ6ZP68 121 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 ATP6V0E2Q8NHE4 81 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 BANF2Q9H503 90 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 PTPRDP23468 1912 aa0.28□□□□□ -2.36
USP40-209ENST00000452724 SPTBP11277 2137 aa0.28□□□□□ -2.37
USP40-209ENST00000452724 KNTC1P50748 2209 aa0.28□□□□□ -2.37
USP40-209ENST00000452724 TRAV12-2A0A075B6T6 113 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 RBP4P02753 201 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 IQCJQ1A5X6 159 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 COA4Q9NYJ1 87 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 BET1LQ9NYM9 111 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 ANKRD30AQ9BXX3 1397 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 CACNA1EQ15878 2313 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 BLMP54132 1417 aaPredicted RBP0.27□□□□□ -2.37
USP40-209ENST00000452724 ZCCHC6Q5VYS8 1495 aaKnown RBP0.27□□□□□ -2.37
USP40-209ENST00000452724 WDR97A6NE52 1622 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 ASH1LQ9NR48 2969 aaKnown RBP0.27□□□□□ -2.37
USP40-209ENST00000452724 ANKRD31Q8N7Z5 1873 aa0.27□□□□□ -2.37
USP40-209ENST00000452724 SPAG17Q6Q759 2223 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 CCDC179H3BU77 68 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 M0R2P5 195 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 SPINK6Q6UWN8 80 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 MMGT1Q8N4V1 131 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms