RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 NDUFAF3Q9BU61 184 aa14.07□□□□□ -0.16
COL9A3-202ENST00000452372 MANBALQ9NQG1 85 aa14.07□□□□□ -0.16
COL9A3-202ENST00000452372 NAGKQ9UJ70 344 aa14.07□□□□□ -0.16
COL9A3-202ENST00000452372 TRGV11A0A075B6L2 103 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 TRBV6-1A0A0K0K1D8 114 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 GAGE12BA1L429 117 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 GAGE7O76087 117 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 PFN1P07737 140 aaKnown RBP14.06□□□□□ -0.16
COL9A3-202ENST00000452372 GAGE12FP0CL80 117 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 GAGE12GP0CL81 117 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 GAGE12IP0CL82 117 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 TMEM183BQ1AE95 376 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 Q86TA4 180 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 TMEM183AQ8IXX5 376 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 KCNS1Q96KK3 526 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 MDFICQ9P1T7 246 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 ZFP30Q9Y2G7 519 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 BOLA1Q9Y3E2 137 aa14.06□□□□□ -0.16
COL9A3-202ENST00000452372 UBE2G1P62253 170 aa14.05□□□□□ -0.16
COL9A3-202ENST00000452372 LGALS9BQ3B8N2 356 aa14.05□□□□□ -0.16
COL9A3-202ENST00000452372 C18orf15Q96N68 181 aa14.05□□□□□ -0.16
COL9A3-202ENST00000452372 GNG13Q9P2W3 67 aa14.05□□□□□ -0.16
COL9A3-202ENST00000452372 TRGV1A0A0A0MS02 117 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 F5H768 121 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 GNRH2O43555 120 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 AKR1C3P42330 323 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 ALKAL2Q6UX46 152 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 COX8CQ7Z4L0 72 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 SDF2L1Q9HCN8 221 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 C11orf21Q9P2W6 132 aa14.04□□□□□ -0.16
COL9A3-202ENST00000452372 S100A9P06702 114 aaKnown RBP14.03□□□□□ -0.16
COL9A3-202ENST00000452372 TMEM88Q6PEY1 159 aa14.03□□□□□ -0.16
COL9A3-202ENST00000452372 TXNDC17Q9BRA2 123 aa14.03□□□□□ -0.16
COL9A3-202ENST00000452372 SPXQ9BT56 116 aa14.03□□□□□ -0.16
COL9A3-202ENST00000452372 IGHV3-16A0A0C4DH30 117 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 SCO2A0A1W2PP80 73 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 FABP5P3A8MUU1 101 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 LTAP01374 205 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 TYMSP04818 313 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 MUC4Q99102 2169 aa14.02□□□□□ -0.17
COL9A3-202ENST00000452372 TRGV2A0A075B6R0 118 aa14.01□□□□□ -0.17
COL9A3-202ENST00000452372 ZC2HC1AQ96GY0 325 aa14.01□□□□□ -0.17
COL9A3-202ENST00000452372 HECTD4Q9Y4D8 3996 aa14.01□□□□□ -0.17
COL9A3-202ENST00000452372 IFNA1P01562 189 aa14□□□□□ -0.17
COL9A3-202ENST00000452372 CRIP1P50238 77 aa14□□□□□ -0.17
COL9A3-202ENST00000452372 BLOC1S1P78537 153 aa14□□□□□ -0.17
COL9A3-202ENST00000452372 MRPL16Q9NX20 251 aaKnown RBP14□□□□□ -0.17
COL9A3-202ENST00000452372 HOXA5P20719 270 aa13.99□□□□□ -0.17
COL9A3-202ENST00000452372 OR5I1Q13606 314 aa13.99□□□□□ -0.17
COL9A3-202ENST00000452372 C15orf53Q8NAA6 179 aa13.99□□□□□ -0.17
COL9A3-202ENST00000452372 RASL10AQ92737 203 aa13.99□□□□□ -0.17
COL9A3-202ENST00000452372 C11orf52Q96A22 123 aa13.99□□□□□ -0.17
COL9A3-202ENST00000452372 DNAH17Q9UFH2 4485 aa13.98□□□□□ -0.17
COL9A3-202ENST00000452372 MEF2BQ02080 365 aaPredicted RBP13.98□□□□□ -0.17
COL9A3-202ENST00000452372 IGKV3D-20A0A0C4DH25 116 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 M0R2P5 195 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 BCL2P10415 239 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 TAGLN2P37802 199 aaKnown RBP13.97□□□□□ -0.17
COL9A3-202ENST00000452372 ZNF674Q2M3X9 581 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 FAM162BQ5T6X4 162 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 LYPD6BQ8NI32 183 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 MLST8Q9BVC4 326 aa13.97□□□□□ -0.17
COL9A3-202ENST00000452372 HERC2O95714 4834 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 DNAH2Q9P225 4427 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 SH2D1AO60880 128 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 P0DMU3 169 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 FAM231AP0DMU4 169 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 FAM231CP0DMU5 169 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 BAGE2Q86Y30 109 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 VAX2Q9UIW0 290 aa13.96□□□□□ -0.17
COL9A3-202ENST00000452372 FAT2Q9NYQ8 4349 aa13.96□□□□□ -0.18
COL9A3-202ENST00000452372 TRAV26-1A0A087WT03 109 aa13.95□□□□□ -0.18
COL9A3-202ENST00000452372 PDE6DO43924 150 aa13.95□□□□□ -0.18
COL9A3-202ENST00000452372 ORM1P02763 201 aa13.95□□□□□ -0.18
COL9A3-202ENST00000452372 RPL35P42766 123 aaKnown RBP13.95□□□□□ -0.18
COL9A3-202ENST00000452372 NHLRC2Q8NBF2 726 aa13.95□□□□□ -0.18
COL9A3-202ENST00000452372 RNASE3P12724 160 aaKnown RBP13.94□□□□□ -0.18
COL9A3-202ENST00000452372 C9orf85Q96MD7 179 aa13.94□□□□□ -0.18
COL9A3-202ENST00000452372 DERL1Q9BUN8 251 aa13.94□□□□□ -0.18
COL9A3-202ENST00000452372 B4DEV8 164 aa13.93□□□□□ -0.18
COL9A3-202ENST00000452372 KRBOX1C9JBD0 128 aa13.93□□□□□ -0.18
COL9A3-202ENST00000452372 H3BNG1 76 aa13.93□□□□□ -0.18
COL9A3-202ENST00000452372 A0A0J9YY99 117 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 NUDT3O95989 172 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 IGHV3-53P01767 116 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 DNLZQ5SXM8 178 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 POM121L12Q8N7R1 296 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 PTH2Q96A98 100 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 MED9Q9NWA0 146 aa13.92□□□□□ -0.18
COL9A3-202ENST00000452372 M0R036 132 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 S100A4P26447 101 aaKnown RBP13.91□□□□□ -0.18
COL9A3-202ENST00000452372 ASIPP42127 132 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 SLAQ13239 276 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 FHL2Q14192 279 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 RNF212Q495C1 297 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 LINC01559Q495D7 138 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 ZNF876PQ49A33 203 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 ZNF575Q86XF7 245 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 ZNF479Q96JC4 524 aa13.91□□□□□ -0.18
COL9A3-202ENST00000452372 TRAV4A0A0B4J268 109 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms