RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SPANXN1Q5VSR9 72 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 C12orf73Q69YU5 71 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 Q6AWC8 147 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 HCP5Q6MZN7 132 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 TXNDC17Q9BRA2 123 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 TMEM242Q9NWH2 141 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 MAPKBP1O60336 1514 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 PXDNLA1KZ92 1463 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 PLXNA3P51805 1871 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 PITX3O75364 302 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 GNG2P59768 71 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 C9orf153Q5TBE3 101 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 TTTY12Q9BZ98 90 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 DISP1Q96F81 1524 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 PZPP20742 1482 aa2.52□□□□□ -2.01
CCDC88A-206ENST00000430086 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 STRCQ7RTU9 1775 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 USP54Q70EL1 1684 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 A0A1W2PRS3 328 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 H3BRM9 83 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 IFITM1P13164 125 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 POLR2JP52435 117 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 ZCCHC23Q6ZST2 131 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 PPDPFLQ8WWR9 84 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 DIDO1Q9BTC0 2240 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 SCN3AQ9NY46 2000 aa2.51□□□□□ -2.01
CCDC88A-206ENST00000430086 MYH6P13533 1939 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 MGAMO43451 1857 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 TRBV6-8A0A0A6YYG3 113 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 A6NIN4 97 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 CCL25O15444 150 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 PIRTP0C851 137 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 CNBPP62633 177 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 RPL7L1Q6DKI1 246 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 UNQ5815/PRO19632Q6UWF5 114 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 FP248Q71RG6 208 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 SPACA4Q8TDM5 124 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 ZCCHC13Q8WW36 166 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 LINC00526Q96FQ7 95 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 LINC00052Q96N35 136 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 MYH9P35579 1960 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 MYH1P12882 1939 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 MYH13Q9UKX3 1938 aa2.5□□□□□ -2.01
CCDC88A-206ENST00000430086 TRAV17A0A0B4J275 112 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 KRTAP12-3P60328 96 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 NPC2P61916 151 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 KRTAP6-3Q3LI67 103 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 KRTAP26-1Q6PEX3 210 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 AQP10Q96PS8 301 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 KLK9Q9UKQ9 250 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 WDR97A6NE52 1622 aa2.49□□□□□ -2.01
CCDC88A-206ENST00000430086 FAM24AA6NFZ4 105 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 CCL16O15467 120 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 IGHV3-33P01772 117 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 SPINK8P0C7L1 97 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 KRTAP12-4P60329 112 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 RHOHQ15669 191 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 C10orf55Q5SWW7 151 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 LINC00299Q6ZSB3 139 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 SDK2Q58EX2 2172 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 ZNF609O15014 1411 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 COL24A1Q17RW2 1714 aa2.48□□□□□ -2.01
CCDC88A-206ENST00000430086 CUL7Q14999 1698 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 ZSWIM8A7E2V4 1837 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 COL11A1P12107 1806 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 ZFHX2Q9C0A1 2572 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 NCKAP5O14513 1909 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 HEATR5BQ9P2D3 2071 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 PVALEFA0A1B0GWK0 134 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 GYPBP06028 91 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 S100A10P60903 97 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 COL5A1-AS1Q5SY13 56 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 NCMAPQ5T1S8 102 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 Q6ZS92 163 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 TSKUQ8WUA8 353 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 PATE1Q8WXA2 126 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 TMEM141Q96I45 108 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 DAPK1P53355 1430 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 ZFYVE16Q7Z3T8 1539 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 KIF13AQ9H1H9 1805 aa2.47□□□□□ -2.01
CCDC88A-206ENST00000430086 HELZP42694 1942 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 MYO9BQ13459 2157 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 COL4A2P08572 1712 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 NRKQ7Z2Y5 1582 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 TMEM30CPA0ZSE6 113 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 COA5Q86WW8 74 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 TTC9CQ8N5M4 171 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 LSM10Q969L4 123 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 NDUFA12Q9UI09 145 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 ATG2AQ2TAZ0 1938 aa2.46□□□□□ -2.02
CCDC88A-206ENST00000430086 ADAMTS7Q9UKP4 1686 aa2.45□□□□□ -2.02
CCDC88A-206ENST00000430086 FREM3P0C091 2139 aa2.45□□□□□ -2.02
CCDC88A-206ENST00000430086 RP1P56715 2156 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 LAMB4A4D0S4 1761 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 TRBV6-4A0A1B0GX49 114 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 TCRBV3S1A0A5B6 114 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 IL7P13232 177 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 SLC48A1Q6P1K1 146 aa2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 AP4S1Q9Y587 144 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms