RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 BAGE3Q86Y29 109 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 ZNF738Q8NE65 137 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 OR10D4PQ8NGN7 298 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 PACRGQ96M98 296 aaPredicted RBP11.68□□□□□ -0.54
SHOX2-202ENST00000425436 CAMPP49913 170 aa11.67□□□□□ -0.54
SHOX2-202ENST00000425436 ERCC8Q13216 396 aa11.67□□□□□ -0.54
SHOX2-202ENST00000425436 PDZD11Q5EBL8 140 aa11.67□□□□□ -0.54
SHOX2-202ENST00000425436 TMEM61Q8N0U2 210 aa11.66□□□□□ -0.54
SHOX2-202ENST00000425436 GATD1Q8NB37 220 aa11.66□□□□□ -0.54
SHOX2-202ENST00000425436 Q8TAT8 98 aa11.66□□□□□ -0.54
SHOX2-202ENST00000425436 MEGF8Q7Z7M0 2845 aa11.66□□□□□ -0.54
SHOX2-202ENST00000425436 IGKV3-7A0A075B6H7 116 aa11.65□□□□□ -0.54
SHOX2-202ENST00000425436 AMBPP02760 352 aa11.65□□□□□ -0.54
SHOX2-202ENST00000425436 ZNF256Q9Y2P7 627 aaPredicted RBP11.65□□□□□ -0.54
SHOX2-202ENST00000425436 FBN3Q75N90 2809 aa11.65□□□□□ -0.54
SHOX2-202ENST00000425436 F2Z2F3 143 aa11.65□□□□□ -0.55
SHOX2-202ENST00000425436 SRIP30626 198 aa11.65□□□□□ -0.55
SHOX2-202ENST00000425436 DEFA6Q01524 100 aa11.65□□□□□ -0.55
SHOX2-202ENST00000425436 SLAQ13239 276 aa11.65□□□□□ -0.55
SHOX2-202ENST00000425436 LINC01559Q495D7 138 aa11.65□□□□□ -0.55
SHOX2-202ENST00000425436 GRIFINA4D1Z8 144 aa11.64□□□□□ -0.55
SHOX2-202ENST00000425436 GZMBP10144 247 aa11.64□□□□□ -0.55
SHOX2-202ENST00000425436 GDF5OSQ5U4N7 250 aa11.64□□□□□ -0.55
SHOX2-202ENST00000425436 DMRTA1Q5VZB9 504 aa11.64□□□□□ -0.55
SHOX2-202ENST00000425436 ORM1P02763 201 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 ZNF80P51504 273 aaPredicted RBP11.63□□□□□ -0.55
SHOX2-202ENST00000425436 KIAA1644Q3SXP7 199 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 TMEM256Q8N2U0 113 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 FER1L6-AS1Q8NA97 138 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 OR2K2Q8NGT1 345 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 C20orf173Q96LM9 149 aa11.63□□□□□ -0.55
SHOX2-202ENST00000425436 ZMAT5Q9UDW3 170 aaKnown RBP11.63□□□□□ -0.55
SHOX2-202ENST00000425436 TFPI2P48307 235 aa11.62□□□□□ -0.55
SHOX2-202ENST00000425436 SNRPD3P62318 126 aaKnown RBP11.62□□□□□ -0.55
SHOX2-202ENST00000425436 ZNF493Q6ZR52 646 aa11.62□□□□□ -0.55
SHOX2-202ENST00000425436 OR8A1Q8NGG7 326 aa11.62□□□□□ -0.55
SHOX2-202ENST00000425436 ALKBH7Q9BT30 221 aaPredicted RBP11.62□□□□□ -0.55
SHOX2-202ENST00000425436 SERF1AO75920 110 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 CTRLP40313 264 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 S100A12P80511 92 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 LYZL1Q6UWQ5 148 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 WFDC3Q8IUB2 231 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 DCANP1Q8TF63 244 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 NIT2Q9NQR4 276 aa11.61□□□□□ -0.55
SHOX2-202ENST00000425436 TRAV25A0A0B4J276 109 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 ARMS2P0C7Q2 107 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 IGLC6P0CF74 106 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 JOSD1Q15040 202 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-202ENST00000425436 TPPP3Q9BW30 176 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 SSBP4Q9BWG4 385 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-202ENST00000425436 TP53TG3Q9ULZ0 132 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 LOC102724200A0A096LPH7 203 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-202ENST00000425436 TRAV21A0A0B4J279 112 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 K7EIL1 84 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 CD7P09564 240 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 PRB4P10163 310 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-202ENST00000425436 PYY3Q5JQD4 70 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 C18orf32Q8TCD1 76 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 FAM19A4Q96LR4 140 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 CNFNQ9BYD5 112 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 SAMD10Q9BYL1 202 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 MS4A6AQ9H2W1 248 aa11.6□□□□□ -0.55
SHOX2-202ENST00000425436 TMSB15BA0A087X1C1 80 aa11.59□□□□□ -0.55
SHOX2-202ENST00000425436 TRAV2A0A0B4J234 112 aa11.59□□□□□ -0.55
SHOX2-202ENST00000425436 Q8N1Y9 231 aa11.59□□□□□ -0.55
SHOX2-202ENST00000425436 KCNS1Q96KK3 526 aa11.59□□□□□ -0.55
SHOX2-202ENST00000425436 GPX1P07203 203 aa11.58□□□□□ -0.56
SHOX2-202ENST00000425436 DEFB121Q5J5C9 76 aa11.58□□□□□ -0.56
SHOX2-202ENST00000425436 APRG1Q8IVJ8 170 aa11.58□□□□□ -0.56
SHOX2-202ENST00000425436 ODF3Q96PU9 254 aa11.58□□□□□ -0.56
SHOX2-202ENST00000425436 SPAG8Q99932 426 aaPredicted RBP11.58□□□□□ -0.56
SHOX2-202ENST00000425436 K7EQG2 157 aa11.57□□□□□ -0.56
SHOX2-202ENST00000425436 NUPR1O60356 82 aa11.57□□□□□ -0.56
SHOX2-202ENST00000425436 GTSCR1Q86UQ5 136 aa11.57□□□□□ -0.56
SHOX2-202ENST00000425436 IGKV3D-20A0A0C4DH25 116 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 DUSP14O95147 198 aaKnown RBP11.56□□□□□ -0.56
SHOX2-202ENST00000425436 LINC00310P59036 64 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 CACNG7P62955 275 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 TWIST1Q15672 202 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 IQCJQ1A5X6 159 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 EBLN2Q6P2I7 272 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 ZFAND2AQ8N6M9 145 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 CHCHD1Q96BP2 118 aaKnown RBP11.56□□□□□ -0.56
SHOX2-202ENST00000425436 WFDC10AQ9H1F0 79 aa11.56□□□□□ -0.56
SHOX2-202ENST00000425436 OR4C46A6NHA9 309 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 ZNF324O75467 553 aaPredicted RBP11.55□□□□□ -0.56
SHOX2-202ENST00000425436 OR5AL1P0C617 328 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 FAM104BQ5XKR9 115 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 MRAPQ8TCY5 172 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 TMEM191AQ9H0A3 160 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 ZNF705DP0CH99 300 aaPredicted RBP11.55□□□□□ -0.56
SHOX2-202ENST00000425436 ZNF705BP0CI00 300 aaPredicted RBP11.55□□□□□ -0.56
SHOX2-202ENST00000425436 RAB4AP20338 218 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 PMCHP20382 165 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 NTF3P20783 257 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 LEPP41159 167 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 SMIM15Q7Z3B0 74 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 ZNF575Q86XF7 245 aa11.55□□□□□ -0.56
SHOX2-202ENST00000425436 IGHV4-4A0A075B6R2 117 aa11.54□□□□□ -0.56
SHOX2-202ENST00000425436 HSBP1O75506 76 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms