RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TFF1P04155 84 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGLL1P15814 213 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 PYGO2Q9BRQ0 406 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 TMEM256-PLSCR3K7ERE1 68 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 Q6ZVH6 145 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGKV1D-43A0A0B4J1Z2 117 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 TRAV4A0A0B4J268 109 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IL15RAQ13261 267 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 FGFBP3Q8TAT2 258 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGHV1-18A0A0C4DH31 117 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 LYZL4Q96KX0 146 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 A0A1B0GUS0 222 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 EFNA4P52798 201 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 FOXI2Q6ZQN5 318 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 TMEM178BH3BS89 294 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 C8orf86Q6ZUL3 223 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 DSCAMO60469 2012 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 OVOL3O00110 214 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 LYNX1G3V0Z9 82 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 LYNX1P0DP58 116 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 PDE6GP18545 87 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 LINC00479Q96M42 142 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 UPK3BQ9BT76 320 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 SHISA3A0PJX4 238 aa10.72□□□□□ -0.69
CCDC88A-204ENST00000413716 ZNF106Q9H2Y7 1883 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 IGLC7A0M8Q6 106 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 SMIM10L1P0DMW3 83 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 SP7Q8TDD2 431 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 SMIM10Q96HG1 83 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 C4orf51C9J302 202 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 GNLYP22749 145 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 CYTL1Q9NRR1 136 aa10.71□□□□□ -0.69
CCDC88A-204ENST00000413716 SRRM5B3KS81 715 aa10.71□□□□□ -0.7
CCDC88A-204ENST00000413716 FAM110AQ9BQ89 295 aa10.71□□□□□ -0.7
CCDC88A-204ENST00000413716 KIAA1671Q9BY89 1806 aa10.71□□□□□ -0.7
CCDC88A-204ENST00000413716 CFHR1Q03591 330 aa10.71□□□□□ -0.7
CCDC88A-204ENST00000413716 A6NED7 52 aa10.71□□□□□ -0.7
CCDC88A-204ENST00000413716 BRD3OSQ6XYD6 125 aa10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 NDUFS7O75251 213 aa10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 HOXB4P17483 251 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 SND1-IT1Q9HBX3 110 aa10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 ZNF672Q499Z4 452 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 ADAMTS9Q9P2N4 1935 aa10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 ZNF837Q96EG3 531 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 C17orf77Q96MU5 243 aa10.7□□□□□ -0.7
CCDC88A-204ENST00000413716 A0A096LPF7 62 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 TIAF1O95411 115 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 CAMK2N2Q96S95 79 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 KIAA1549LQ6ZVL6 1849 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 C15orf62A8K5M9 175 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 Q9HAA7 133 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 FAM236DA0A1B0GTK5 79 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 FAM236CP0DP71 79 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 SAA4P35542 130 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 LGALS9O00182 355 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 IGKV1-9A0A0C4DH69 117 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 MRPL53Q96EL3 112 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 TANC1Q9C0D5 1861 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 EFNA2O43921 213 aa10.69□□□□□ -0.7
CCDC88A-204ENST00000413716 E9PLN8 166 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 HIST2H2BCQ6DN03 193 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 Q6ZUT4 128 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 MST1LQ2TV78 715 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 TRBV10-2A0A0K0K1G8 114 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 SH2D6Q7Z4S9 175 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 MBD3L4A6NDZ8 208 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 MBD3L3A6NE82 208 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 MBD3L5A6NJ08 208 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 GATA3P23771 443 aa10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 MBD3L2Q8NHZ7 208 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-204ENST00000413716 COX7A2LO14548 114 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 RETNQ9HD89 108 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 IGKV1D-8A0A087WSZ0 117 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 WDR90Q96KV7 1748 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 MLST8Q9BVC4 326 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 TMEM14BQ9NUH8 114 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 FOXF2Q12947 444 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 LINC00114Q6XXX2 140 aa10.67□□□□□ -0.7
CCDC88A-204ENST00000413716 Q6ZQT7 251 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 IGHV2-70DA0A0C4DH43 119 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 LINC00473A8K010 186 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 YPEL3P61236 119 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 C1orf53Q5VUE5 145 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 CYYR1Q96J86 154 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 LAIR2Q6ISS4 152 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 LHFPL1Q86WI0 220 aa10.66□□□□□ -0.7
CCDC88A-204ENST00000413716 NOP10Q9NPE3 64 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 TRAV23DV6A0A075B6W5 121 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 DAZ2Q13117 558 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 DAZ4Q86SG3 579 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 DAZ3Q9NR90 486 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 TMEM14CQ9P0S9 112 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 ATP6V0E2Q8NHE4 81 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 B9D2Q9BPU9 175 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 V9GYV3 84 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 FAM231DQ6ZW35 169 aa10.65□□□□□ -0.7
CCDC88A-204ENST00000413716 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-204ENST00000413716 IGKV2-29A2NJV5 120 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-204ENST00000413716 PAQR4Q8N4S7 273 aaPredicted RBP10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms