RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SORL1Q92673 2214 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 TRAV12-2A0A075B6T6 113 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 A8MTW9 85 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 H3BMM0 161 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 MT-ND6P03923 174 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 CTRLP40313 264 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 SPINK13Q1W4C9 94 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 PRR31Q5SQ13 230 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 GFI1BQ5VTD9 330 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 A0A1B0GUT8 65 aa10.4□□□□□ -0.74
GPNMB-203ENST00000409458 C7orf71A4D174 169 aa10.4□□□□□ -0.74
GPNMB-203ENST00000409458 HLA-DQA1P01909 254 aa10.4□□□□□ -0.74
GPNMB-203ENST00000409458 CDKN1BP46527 198 aa10.4□□□□□ -0.74
GPNMB-203ENST00000409458 MUC21Q5SSG8 566 aa10.4□□□□□ -0.74
GPNMB-203ENST00000409458 MUC21A0A0G2JKD1 596 aa10.39□□□□□ -0.75
GPNMB-203ENST00000409458 MUC21A0A140T8X8 626 aa10.39□□□□□ -0.75
GPNMB-203ENST00000409458 ANXA2RQ3ZCQ2 193 aa10.39□□□□□ -0.75
GPNMB-203ENST00000409458 SSBP4Q9BWG4 385 aaPredicted RBP10.39□□□□□ -0.75
GPNMB-203ENST00000409458 TRAV12-3A0A0B4J271 114 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 OR11H12B2RN74 326 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 S100A6P06703 90 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 TSPOP30536 169 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 FXYD7P58549 80 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 SLAQ13239 276 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 RIGQ13278 110 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 BORCS7Q96B45 105 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 ZNF324O75467 553 aaPredicted RBP10.38□□□□□ -0.75
GPNMB-203ENST00000409458 NDUFA6P56556 154 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 SSTP61278 116 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 SNRPEP62304 92 aaKnown RBP10.38□□□□□ -0.75
GPNMB-203ENST00000409458 BEAN1Q3B7T3 259 aa10.38□□□□□ -0.75
GPNMB-203ENST00000409458 C5orf52A6NGY3 159 aa10.37□□□□□ -0.75
GPNMB-203ENST00000409458 APCSP02743 223 aa10.37□□□□□ -0.75
GPNMB-203ENST00000409458 CD7P09564 240 aa10.37□□□□□ -0.75
GPNMB-203ENST00000409458 KIAA1644Q3SXP7 199 aa10.37□□□□□ -0.75
GPNMB-203ENST00000409458 CNFNQ9BYD5 112 aa10.37□□□□□ -0.75
GPNMB-203ENST00000409458 H3BVH4 76 aa10.36□□□□□ -0.75
GPNMB-203ENST00000409458 CRXO43186 299 aaPredicted RBP10.36□□□□□ -0.75
GPNMB-203ENST00000409458 GATD1Q8NB37 220 aa10.36□□□□□ -0.75
GPNMB-203ENST00000409458 WFDC10AQ9H1F0 79 aa10.36□□□□□ -0.75
GPNMB-203ENST00000409458 ATRQ13535 2644 aa10.36□□□□□ -0.75
GPNMB-203ENST00000409458 A0A1B0GW15 77 aa10.35□□□□□ -0.75
GPNMB-203ENST00000409458 SNAI2O43623 268 aa10.35□□□□□ -0.75
GPNMB-203ENST00000409458 RBMY1A1P0DJD3 496 aaKnown RBP10.35□□□□□ -0.75
GPNMB-203ENST00000409458 RBMY1CP0DJD4 496 aa10.35□□□□□ -0.75
GPNMB-203ENST00000409458 RBMY1FQ15415 496 aaKnown RBP10.35□□□□□ -0.75
GPNMB-203ENST00000409458 ZNF747Q9BV97 191 aa10.35□□□□□ -0.75
GPNMB-203ENST00000409458 C19orf73Q9NVV2 129 aa10.35□□□□□ -0.75
GPNMB-203ENST00000409458 FBN1P35555 2871 aaKnown RBP10.35□□□□□ -0.75
GPNMB-203ENST00000409458 GNRH2O43555 120 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 ASIPP42127 132 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 C9orf66Q5T8R8 295 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 FAM159AQ6UWV7 190 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 TRPT1Q86TN4 253 aaKnown RBP10.34□□□□□ -0.75
GPNMB-203ENST00000409458 STHQ8IWL8 128 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 OR10AG1Q8NH19 301 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 TIMM8BQ9Y5J9 83 aaPredicted RBP10.34□□□□□ -0.75
GPNMB-203ENST00000409458 VWFP04275 2813 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 F2Z2F3 143 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 S100A8P05109 93 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 OR5AL1P0C617 328 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 NTF3P20783 257 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 INSL3P51460 131 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 CMC4P56277 68 aaPredicted RBP10.34□□□□□ -0.75
GPNMB-203ENST00000409458 TWIST1Q15672 202 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 ZNF493Q6ZR52 646 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 CLUHP3Q96NS8 147 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 FAM110AQ9BQ89 295 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 MSRB1Q9NZV6 116 aa10.34□□□□□ -0.75
GPNMB-203ENST00000409458 TRRAPQ9Y4A5 3859 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 CMYA5Q8N3K9 4069 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 UBE2CO00762 179 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 SRIP30626 198 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 DNLZQ5SXM8 178 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 TP53TG3Q9ULZ0 132 aa10.33□□□□□ -0.76
GPNMB-203ENST00000409458 SPRY2O43597 315 aa10.32□□□□□ -0.76
GPNMB-203ENST00000409458 MED14OSP0DP75 135 aa10.32□□□□□ -0.76
GPNMB-203ENST00000409458 RNASE3P12724 160 aaKnown RBP10.32□□□□□ -0.76
GPNMB-203ENST00000409458 S100A4P26447 101 aaKnown RBP10.32□□□□□ -0.76
GPNMB-203ENST00000409458 TDRG1Q3Y452 100 aa10.32□□□□□ -0.76
GPNMB-203ENST00000409458 LCE2DQ5TA82 110 aaPredicted RBP10.32□□□□□ -0.76
GPNMB-203ENST00000409458 KCNS1Q96KK3 526 aa10.32□□□□□ -0.76
GPNMB-203ENST00000409458 MAST4O15021 2626 aa10.32□□□□□ -0.76
GPNMB-203ENST00000409458 IGHV1OR15-1A0A075B7D0 117 aa10.31□□□□□ -0.76
GPNMB-203ENST00000409458 LOC102724200A0A096LPH7 203 aaPredicted RBP10.31□□□□□ -0.76
GPNMB-203ENST00000409458 HOXA5P20719 270 aa10.31□□□□□ -0.76
GPNMB-203ENST00000409458 SCRT2Q9NQ03 307 aa10.31□□□□□ -0.76
GPNMB-203ENST00000409458 CACNG7P62955 275 aa10.31□□□□□ -0.76
GPNMB-203ENST00000409458 COA6Q5JTJ3 125 aaKnown RBP10.31□□□□□ -0.76
GPNMB-203ENST00000409458 C3orf56Q8N813 242 aa10.31□□□□□ -0.76
GPNMB-203ENST00000409458 IGHV4-4A0A075B6R2 117 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 IGHV3-16A0A0C4DH30 117 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 INSP01308 110 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 IGLL1P15814 213 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 PDZD11Q5EBL8 140 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 SPANXN1Q5VSR9 72 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 C12orf54Q6X4T0 127 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 AMN1Q8IY45 258 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 Q8N1Y9 231 aa10.3□□□□□ -0.76
GPNMB-203ENST00000409458 WFDC9Q8NEX5 89 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms