RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 OR5AL1P0C617 328 aa14.18□□□□□ -0.14
USP39-202ENST00000409025 S100A12P80511 92 aa14.18□□□□□ -0.14
USP39-202ENST00000409025 DYNLRB2Q8TF09 96 aa14.18□□□□□ -0.14
USP39-202ENST00000409025 ODF3Q96PU9 254 aa14.18□□□□□ -0.14
USP39-202ENST00000409025 TSSC4Q9Y5U2 329 aaPredicted RBP14.18□□□□□ -0.14
USP39-202ENST00000409025 KLLNB2CW77 178 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 LEPP41159 167 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 MSRB1Q9NZV6 116 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 TRAV2A0A0B4J234 112 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 SNAI2O43623 268 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 DUSP14O95147 198 aaKnown RBP14.17□□□□□ -0.14
USP39-202ENST00000409025 NDUFA7O95182 113 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 SCGB1D1O95968 90 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 KIR3DS1Q14943 382 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 FAM19A2Q8N3H0 131 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 CHCHD1Q96BP2 118 aaKnown RBP14.17□□□□□ -0.14
USP39-202ENST00000409025 CITED2Q99967 270 aaPredicted RBP14.17□□□□□ -0.14
USP39-202ENST00000409025 GSN-AS1Q9NRJ2 163 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 U3KQK5 164 aa14.17□□□□□ -0.14
USP39-202ENST00000409025 CACNG7P62955 275 aa14.16□□□□□ -0.14
USP39-202ENST00000409025 MRPL51Q4U2R6 128 aaKnown RBP14.16□□□□□ -0.14
USP39-202ENST00000409025 URB1-AS1Q96HZ7 61 aa14.16□□□□□ -0.14
USP39-202ENST00000409025 MYO9AB2RTY4 2548 aa14.16□□□□□ -0.14
USP39-202ENST00000409025 D6R8Y8 96 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 CCL24O00175 119 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 FHL3Q13643 280 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 ANXA2RQ3ZCQ2 193 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 DMRTA1Q5VZB9 504 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 FOXI2Q6ZQN5 318 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 ORMDL3Q8N138 153 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 OR10AG1Q8NH19 301 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 ANK3Q12955 4377 aaKnown RBP14.15□□□□□ -0.14
USP39-202ENST00000409025 H3BVH4 76 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 LINC00614P0C842 121 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 ASIPP42127 132 aa14.15□□□□□ -0.14
USP39-202ENST00000409025 M0R2Z0 102 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 S100A4P26447 101 aaKnown RBP14.14□□□□□ -0.15
USP39-202ENST00000409025 SPANXN1Q5VSR9 72 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 SMIM15Q7Z3B0 74 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 TMEM61Q8N0U2 210 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 PRELID3AQ96N28 172 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 RNF114Q9Y508 228 aa14.14□□□□□ -0.15
USP39-202ENST00000409025 IGHV4-4A0A075B6R2 117 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 DEFB114Q30KQ6 69 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 C7orf71A4D174 169 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 IGKV3-20P01619 116 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 TSPOP30536 169 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 CKS2P33552 79 aa14.13□□□□□ -0.15
USP39-202ENST00000409025 TIMM8BQ9Y5J9 83 aaPredicted RBP14.13□□□□□ -0.15
USP39-202ENST00000409025 MED14OSP0DP75 135 aa14.12□□□□□ -0.15
USP39-202ENST00000409025 RAB4AP20338 218 aa14.12□□□□□ -0.15
USP39-202ENST00000409025 RNF185Q96GF1 192 aa14.12□□□□□ -0.15
USP39-202ENST00000409025 KRTDAPP60985 99 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 FAM159AQ6UWV7 190 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 TRAV12-3A0A0B4J271 114 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 PPBPP02775 128 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 CDKN1BP46527 198 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 DEFB131AP59861 70 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 PRSS3P2Q8NHM4 247 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 HIVEP2P31629 2446 aa14.11□□□□□ -0.15
USP39-202ENST00000409025 GNRH2O43555 120 aa14.1□□□□□ -0.15
USP39-202ENST00000409025 INAFM1C9JVW0 142 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 CD300EQ496F6 205 aaPredicted RBP14.09□□□□□ -0.15
USP39-202ENST00000409025 FA2HQ7L5A8 372 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 PHLDA3Q9Y5J5 127 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 TRAV25A0A0B4J276 109 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 OR4C46A6NHA9 309 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 SMKR1H3BMG3 65 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 EVI2AP22794 236 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 PROK1P58294 105 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 SPAG8Q99932 426 aaPredicted RBP14.09□□□□□ -0.15
USP39-202ENST00000409025 BAHCC1Q9P281 2608 aa14.09□□□□□ -0.15
USP39-202ENST00000409025 IGHV1-24A0A0C4DH33 117 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 KNCNA6PVL3 124 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 NCR2O95944 276 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 FOSL1P15407 271 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 PMCHL1Q16048 86 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 SPINK13Q1W4C9 94 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 SCRT2Q9NQ03 307 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 AP5S1Q9NUS5 200 aa14.08□□□□□ -0.16
USP39-202ENST00000409025 TRAV12-2A0A075B6T6 113 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 TCF21O43680 179 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 C3orf79P0CE67 100 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 AMTNQ6UX39 209 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 SIGLEC8Q9NYZ4 499 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 LAMTOR2Q9Y2Q5 125 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 LOC389332A0A1B0GUA5 103 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 M0R381 172 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 NPYP01303 97 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 RNASE3P12724 160 aaKnown RBP14.07□□□□□ -0.16
USP39-202ENST00000409025 HLA-DRB4P13762 266 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 IFI27P40305 119 aaPredicted RBP14.07□□□□□ -0.16
USP39-202ENST00000409025 MAP6D1Q9H9H5 199 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 HLA-DRB4X5D2U9 266 aa14.07□□□□□ -0.16
USP39-202ENST00000409025 PKIAP61925 76 aa14.06□□□□□ -0.16
USP39-202ENST00000409025 TDRG1Q3Y452 100 aa14.06□□□□□ -0.16
USP39-202ENST00000409025 CD7P09564 240 aa14.05□□□□□ -0.16
USP39-202ENST00000409025 MTORP42345 2549 aa14.05□□□□□ -0.16
USP39-202ENST00000409025 A8MTW9 85 aa14.05□□□□□ -0.16
USP39-202ENST00000409025 TSTD3H0UI37 97 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 238 ms