RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SPXQ9BT56 116 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 SPANXB1Q9NS25 103 aaPredicted RBP9.44□□□□□ -0.9
HMGB1-206ENST00000405805 HLA-DRB4X5D2U9 266 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 DCHS1Q96JQ0 3298 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 SLC25A20O43772 301 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 CGB3P0DN86 165 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 CGB7P0DN87 165 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 GATA4P43694 442 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 LY6EQ16553 131 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 IGFL2Q6UWQ7 119 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 TMEM158Q8WZ71 300 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 ZNF747Q9BV97 191 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 C2orf70A6NJV1 201 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 RRN3P1Q2M238 152 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 MSRB1Q9NZV6 116 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 IGKV1D-37A0A075B6S9 117 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 LTAP01374 205 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 IGHV3-11P01762 117 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 LOXL1Q08397 574 aaPredicted RBP9.43□□□□□ -0.9
HMGB1-206ENST00000405805 ZNF672Q499Z4 452 aaPredicted RBP9.43□□□□□ -0.9
HMGB1-206ENST00000405805 MRAPQ8TCY5 172 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 ZNF292O60281 2723 aa9.43□□□□□ -0.9
HMGB1-206ENST00000405805 B9A039 149 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 GATA1P15976 413 aaPredicted RBP9.42□□□□□ -0.9
HMGB1-206ENST00000405805 SRD5A1P18405 259 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 TRBV25-1A0A075B6N4 114 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 NDUFV3P56181 108 aaKnown RBP9.42□□□□□ -0.9
HMGB1-206ENST00000405805 C5orf64Q2M2E5 130 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 DGAT2L7PQ6IED9 249 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 SIGLEC8Q9NYZ4 499 aa9.42□□□□□ -0.9
HMGB1-206ENST00000405805 TRBV19A0A075B6N1 114 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 GRNP28799 593 aaKnown RBP9.41□□□□□ -0.9
HMGB1-206ENST00000405805 ATMQ13315 3056 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 PCSK5Q92824 1860 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 FAM236AA0A1B0GUQ0 79 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 FAM236BA0A1B0GV22 79 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 TMEM219Q86XT9 240 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 TRAV26-2A0A0B4J265 109 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 IGKV1-17P01599 117 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 FAM74A4Q5TZK3 123 aa9.41□□□□□ -0.9
HMGB1-206ENST00000405805 CEACAM4O75871 244 aa9.4□□□□□ -0.9
HMGB1-206ENST00000405805 NPYP01303 97 aa9.4□□□□□ -0.9
HMGB1-206ENST00000405805 IGFL3Q6UXB1 125 aa9.4□□□□□ -0.9
HMGB1-206ENST00000405805 OR11H6Q8NGC7 330 aa9.4□□□□□ -0.9
HMGB1-206ENST00000405805 CHCHD5Q9BSY4 110 aa9.4□□□□□ -0.9
HMGB1-206ENST00000405805 ZFYVE26Q68DK2 2539 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 J3KT08 172 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 TRACP01848 142 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 GP9P14770 177 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 XGP55808 180 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 C15orf32Q32M92 178 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 PSMG4Q5JS54 123 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 Q8N976 141 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 MBD6Q96DN6 1003 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 DMXL1Q9Y485 3027 aa9.4□□□□□ -0.91
HMGB1-206ENST00000405805 H3BMM0 161 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 DNAL4O96015 105 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 ZNF415Q09FC8 603 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 MRPL51Q4U2R6 128 aaKnown RBP9.39□□□□□ -0.91
HMGB1-206ENST00000405805 UBE2WQ96B02 151 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 SHANK2-AS3Q9BTD1 123 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 MYO18BQ8IUG5 2567 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 NEGR1Q7Z3B1 354 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 MRPL35Q9NZE8 188 aaKnown RBP9.39□□□□□ -0.91
HMGB1-206ENST00000405805 PHLDA3Q9Y5J5 127 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 TEX36Q5VZQ5 186 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 ABCA2Q9BZC7 2435 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 AKAP13Q12802 2813 aa9.39□□□□□ -0.91
HMGB1-206ENST00000405805 A0A0U1RQV1 116 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 KHDC1LQ5JSQ8 128 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 S100A7L2Q5SY68 101 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 TEN1Q86WV5 123 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 THAP8Q8NA92 274 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 PVRIGQ6DKI7 326 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 ZNF625Q96I27 306 aaPredicted RBP9.38□□□□□ -0.91
HMGB1-206ENST00000405805 SPANXA1Q9NS26 97 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 KALRNO60229 2985 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 FGF6P10767 208 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 SLC25A16P16260 332 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 ANKRD29Q8N6D5 301 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 ZNF491Q8N8L2 437 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 METTL26Q96S19 204 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 IGLV2-23P01705 113 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 LY6DQ14210 128 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 LGALS9BQ3B8N2 356 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 LGALS9CQ6DKI2 356 aa9.38□□□□□ -0.91
HMGB1-206ENST00000405805 IGKV3D-20A0A0C4DH25 116 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 G3V318 75 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 NDUFS7O75251 213 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 FAM104BQ5XKR9 115 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 POLQO75417 2590 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 KLF5Q13887 457 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-206ENST00000405805 CR1LQ2VPA4 569 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 WIPF2Q8TF74 440 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-206ENST00000405805 ZNF492Q9P255 531 aa9.37□□□□□ -0.91
HMGB1-206ENST00000405805 THBDP07204 575 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 EGR2P11161 476 aaPredicted RBP9.36□□□□□ -0.91
HMGB1-206ENST00000405805 ATXN8Q156A1 80 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 LINC01545Q5VT33 79 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 Q6AWC8 147 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms